Gossypium arboreum (tree cotton): 108481829
Help
Entry
108481829 CDS
T05776
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab00040
Pentose and glucuronate interconversions
gab01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108481829
Enzymes [BR:
gab01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108481829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108481829
NCBI-ProteinID:
XP_052880837
LinkDB
All DBs
Position
1:115473773..115476029
Genome browser
AA seq
454 aa
AA seq
DB search
MEVTKVRFAFFFSFAALIPGLWANIAEFDDFWKQREEEAWNITLATYERNPENVTNNLSY
NVNKFLKETSANQTIDFEDGITNNTRRYLRGKHKKYTGPCMATNPIDRCWRCKKNWAKNR
KRLAKCVLGFGHRTHGGSKGKYYLVTDNSDHDVLNPKLGTLRHAVIQKRPLWIIFARTMH
IKLSQELIVQSHKTIDGRGADVHIAYGAGITLQFVHNVIIHNIHIHRIVPSSGGLIRDSE
DHFGYRTVGDGDGISIFGSSNIWLDHISMSECHDGLIDAIQGSTAITVSNCHFTHHDAVM
LLGASDSYSKDKFMQVTIAFNRFGKELLQRMPRCRWGFFHVVNNDYTHWKMYAIGGSMHP
TIISQGNRFIAPHDPNAKEVTNRLYASESEWKNWIWRSERDVLLNGATFRTSGPLSPPHL
KFNRKEMIKAKPGAYVRRLTRFAGTLNCRKRIKC
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggaggtaactaaagtgaggtttgcttttttcttttcgtttgccgcactaattccagga
ttatgggcaaatattgctgaatttgatgacttttggaagcaacgtgaggaagaagcatgg
aatattaccttggcaacttatgagcgaaacccagaaaacgtcaccaataatttgagctat
aacgttaacaagtttcttaaagaaactagtgccaaccaaaccatagattttgaggatggt
attactaacaacacaagaagatacttgagaggaaaacacaagaagtacactggtccgtgc
atggcgaccaatccaattgataggtgttggcggtgtaagaagaactgggccaaaaatcgt
aaaagattggcaaaatgtgtgcttggttttggccatagaactcatggtggaagtaagggg
aagtattatttggtgacagataattctgatcatgatgttctaaacccaaaactaggaacc
ttacgtcatgctgtgatccaaaaaaggccattatggatcatttttgctcgtaccatgcac
atcaaattgtcacaagagctaatagttcaaagtcataagacaatcgatggccgtggagca
gatgttcatatagcatatggagctggaattacacttcaatttgtgcacaatgtcatcatt
cacaacattcatatccatcgcattgttccaagttccggtggcctaatcagggactctgaa
gatcactttggttacagaacagtaggtgatggagatggaatttccatatttggatcatca
aatatttggcttgatcacatttctatgtctgagtgccatgatgggcttattgatgcaatc
cagggttcaactgccatcaccgtttcaaattgccatttcacccatcacgatgctgtgatg
ttgttaggagcaagtgatagctattctaaagataaattcatgcaagtgacaatagcattc
aaccgttttggcaaggaattattacaaagaatgcctagatgtcgatggggtttctttcat
gttgttaacaatgactacacacattggaaaatgtatgctattggtggtagcatgcatccc
accattatcagccaaggtaacaggttcattgctccgcatgaccccaatgccaaagaggta
accaataggctctatgcatcagagtcagaatggaaaaattggatatggagatcagaaaga
gacgtactccttaatggagccacctttagaacttctgggccactctcgccaccccatttg
aaattcaacagaaaggaaatgatcaaagccaaacctggagcatatgtcagaagactcact
cgtttcgcggggactcttaactgtagaaaaagaatcaaatgttag
DBGET
integrated database retrieval system