Gossypium arboreum (tree cotton): 108482552
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Entry
108482552 CDS
T05776
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab00040
Pentose and glucuronate interconversions
gab01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108482552
Enzymes [BR:
gab01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108482552
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108482552
NCBI-ProteinID:
XP_017641171
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All DBs
Position
1:17277869..17287981
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AA seq
434 aa
AA seq
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MISVNLRIILFLGLIVYSPIVKGNIGHFDEVWQERAENAKKGAFKAYNPNPENVTNDLNR
ETEKVLEGQNNTRRGLYKHHGPCLATNPIDRCWRCDPNWAKDRKKLVNCVLGFGRKTTGG
KAGRYYVVTDPSDNDMVNPKPGTLRHAVIQKEPLWIIFAHHMVIRLNQELIMAGDKTIDG
RGFQIHIVGGAQITLQFINNVIIHGLHIRNSVQAHGGMIRDSVDHYGQRTMSDGDGITIF
GSHNIWIDHLSMSKCYDGLIDILMASTAITISNCHFTNHNDVFLFGSSDSFSDDQIMQVT
VAFNHFGKGLVQRMPRVRWGFVHVVNNDYTHWLMYAIGGSKNPTILSEGNRFIAPPDKRA
KEITKREYSPESVWKSWKWRSVNDLMMNGAFFVESGGPISRGNKKDVIKAKTGASAGRLT
RFAGALNCVEHKPC
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgatcagtgtcaacctaagaattatattgtttctggggctaattgtatatagtcccata
gttaaaggtaacattggtcattttgatgaagtgtggcaagaacgagctgaaaatgcaaag
aaaggtgccttcaaagcctacaatcctaatcccgaaaatgtaaccaatgatttaaaccgc
gaaactgagaaggtgttggaaggtcagaataacacaaggagaggactatataaacaccat
ggtccatgcctagccactaaccctattgacagatgctggagatgtgatccaaactgggct
aaagaccgcaagaagctagttaactgtgtcctaggattcggccgcaaaaccaccggaggc
aaggcaggtcgatattatgttgtaacagatccgtcagacaacgatatggtaaaccctaaa
cccggaaccttacggcatgcagtgatccaaaaagaacctctttggatcatatttgctcat
cacatggtgattaggttaaaccaagagctgattatggctggtgacaagaccatagacggt
cgaggatttcaaattcacattgtgggtggtgctcaaatcacattgcagttcattaataat
gttatcatccatggccttcacattcgtaattcggtacaagctcatggtggcatgatacga
gactccgttgatcattacggtcaacgtacgatgagtgacggtgatggaatcacgatattt
ggatcccacaatatttggatcgatcacctttctatgtccaaatgctacgatggattaatc
gatattcttatggcatctacggccattaccatctctaactgccattttactaaccataac
gatgtcttcctgtttggaagtagtgatagcttctcagatgatcaaatcatgcaagtaacg
gttgctttcaaccattttggcaaaggattggtgcaaaggatgccaagggtccgatgggga
ttcgttcatgttgtcaacaatgattacactcattggctaatgtatgccattggtggtagc
aaaaaccctaccatcctaagtgagggcaaccgattcattgctcctccagacaaacgcgct
aaagagattaccaagagggagtattcaccagagagtgtatggaagtcatggaagtggaga
tctgtgaatgatctaatgatgaatggggccttctttgttgaatctgggggaccaattagt
aggggaaacaagaaagacgtgatcaaggcaaagacaggagcttctgcaggcaggctaaca
cgctttgcaggggctctcaactgcgtcgaacacaaaccctgttga
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