Gossypium arboreum (tree cotton): 108482734
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Entry
108482734 CDS
T05776
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38-like
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03013
Nucleocytoplasmic transport
gab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108482734
03015 mRNA surveillance pathway
108482734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108482734
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108482734
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108482734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
108482734
NCBI-ProteinID:
XP_017641346
UniProt:
A0ABR0P7K8
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All DBs
Position
7:complement(105082291..105084824)
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AA seq
472 aa
AA seq
DB search
MAETAADSVISKEKDYAPASTSSTSEEKVVSEIDIQNLTIDDSNKLLDEDSNIKIITSGD
TPYRSAFTFEELNLSPQLLKGLYVEMNYQKPSKIQAISLPLILDPPYLDLIAQAHNGSGK
TACFTLGMLSRVDPKLKAPQALCCCPTRELAIQNSEVLRKMGKYTGITFECAIGGDFTNK
SRNKKGSPITAQVVIGTPGTIMRLMSEKTLGLSYLMMLVFDEADHMLAKEGFKDKSSYMM
EHIGRATSHCQVLLFSATFNESVKKFAAKIAKGNHNELFVKKEELSLESVIQYKVDCPDE
LAKVMVIKDQILEFGERIGQTIIFVQTRNSAIMLHKSLVDLGYDVTTIQGALKQEDRDKI
VKEFKDGLTQVLISTDLLARGFDQQQVNLIINYNLPVKYGHSTEPDCEVYLHRIGRAGRF
GRKGAVFNLLCGDMDEMIMSKIETHFDMKIAKVPDWRNEEGFKAAMRSAGLL
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaactgctgcagactcggttatttctaaggaaaaggactatgctccggcgagc
acttcctcaacatcggaagaaaaagttgtatccgaaatcgacattcagaacttaacaatc
gacgatagcaataagctccttgatgaagactccaacatcaaaatcattacatcaggagat
acgccgtacaggtcggcatttacttttgaggagttgaatttgtcgccacaactgttgaag
ggtttgtatgttgagatgaattaccaaaagcctagtaaaatacaggctattagtttgcca
ttgattttggatcccccttatttggatttaatcgctcaagctcataacggttctggaaaa
actgcttgctttacgctgggaatgctatctcgtgtcgatccgaaattaaaagctcctcaa
gccttgtgttgttgtcccactagagaattggctattcagaattcggaagtgctgaggaag
atggggaagtatactgggataacttttgaatgtgctattggaggggattttactaataaa
agtcgcaataagaaaggatcgcctattacagcgcaagtagttattggtactccgggcact
attatgagactgatgagtgagaagacattgggtttgagttacctcatgatgcttgtgttt
gatgaggctgatcacatgcttgctaaggaaggatttaaagataaatcttcttacatgatg
gagcatattggacgtgccacttctcactgtcaggttctcctgttttctgccacattcaat
gaatctgttaagaagtttgctgcaaagatagctaaaggaaatcacaacgagttgtttgtc
aagaaggaagaactatcattggaatcggtgatccagtataaagtggattgtccagatgaa
cttgctaaggttatggtaatcaaggaccaaattttggaattcggagagcgtatagggcag
acgataatatttgtccagacgaggaatagtgcaatcatgttgcacaagagccttgtcgac
cttggttacgatgttactacaattcaaggtgctctcaagcaagaagatcgagacaagata
gtcaaagagtttaaagatgggttgactcaagttctcatttcaaccgatcttcttgcccgg
ggttttgaccaacaacaggtcaatttgatcatcaattataaccttcccgtgaaatatggc
cattctacggaacctgattgtgaggtttatctgcatagaattggtagagccggaagattt
ggtcgcaaaggagctgtgttcaatttgttatgcggtgatatggacgaaatgataatgtca
aaaatcgaaactcatttcgacatgaaaatcgcaaaggttcctgactggagaaatgaggaa
ggctttaaagctgcaatgaggtcagctggtttattataa
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