Gossypium arboreum (tree cotton): 108483063
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Entry
108483063 CDS
T05776
Name
(RefSeq) DNA polymerase lambda isoform X1
KO
K03512
DNA polymerase lambda [EC:
2.7.7.7
4.2.99.-]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03410
Base excision repair
gab03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
108483063
03450 Non-homologous end-joining
108483063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gab03400
]
108483063
Enzymes [BR:
gab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
108483063
DNA repair and recombination proteins [BR:
gab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
108483063
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
108483063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_B_thumb
DNA_pol_lambd_f
HHH_8
HHH_5
BRCT
NTP_transf_2
Cdd1
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
108483063
NCBI-ProteinID:
XP_017641739
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All DBs
Position
1:52703452..52716053
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AA seq
536 aa
AA seq
DB search
MAPKRTKRKSPSLDPQGMFAGMTVFLIEDGVQSVRLQIWKQKLVQMGAKVETQLSEKVSH
VFAISSDALFHHVDGDRLARFKGHVLLYQWLEESLAAGEKVSEDFYILKVDPEGFDIFDK
SLKPKLANRNSSSYDEHSHCKRMKSSHEETKQTNEEKKGDIETNSVSWASNTEPHSPSSL
TSSPEISSTQDKDVGMQTSFQYSPPDLNKGITEIFGKLVNIYRALGDDRRSFSYYKAIAV
VEKLPFKVESADQVKDLPGIGKSMQDHIQEIVTTGKLSKLEHFETDEKVKTITLFGEVWG
IGPATALKLYEKGHRTLDDLKNEDSLTNAQVIGLKYFDDIKTRIPRHEAQEMELVLQKVA
EDILPGMVVVCGGSYRRGKASCGDLDIVITHPDGKSHKGFLQNYVKRLKEMKLLREDLIF
STHSEEGTDSGVDTYFGLCTYPGRELRRRIDFKVYPRDIYAFGLIAWTGNDVLNRRLRLL
AESKGYRLDDTGLFPATHGSGSKRGSRGTASLKLETEKEVFDFLGFPWLEPYERNL
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atggcacccaagcgaaccaaaagaaagtctccgtccctcgatccacaaggaatgttcgcc
ggtatgacggttttcttaatcgaagatggcgtccagtctgttcgtttacagatttggaag
caaaagctggtacaaatgggagctaaggtcgagactcagttgtccgaaaaagtcagtcat
gtttttgctatcagctcagatgctctttttcaccacgtcgatggcgaccgattggctcgc
ttcaaagggcatgttcttttgtatcagtggttggaggaaagcctggcagctggtgaaaag
gtttctgaggatttctacattctgaaagtggatcctgaagggttcgatatatttgacaag
agtttgaagcctaaactagccaacaggaattcttccagctatgatgaacattcacattgc
aaaagaatgaaatcctcacatgaggagacaaaacaaactaatgaagaaaagaaaggggat
atagaaacaaactctgtatcttgggcatcaaatactgagccccactctcccagctcccta
actagcagtcctgaaatatctagtactcaagataaggatgttggcatgcaaacatctttt
cagtacagtccgccagatttaaacaagggcattacagagatatttgggaaacttgtcaac
atatatagagcgctgggtgatgaccgaagatcatttagctactacaaggcaattgcagtt
gttgagaaattgccctttaaagttgaaagtgcagatcaggtaaaagatctgcctggaatt
ggaaagtcaatgcaagatcatattcaggagatagtgactaccggaaagttatccaagttg
gagcattttgaaactgatgagaaggtaaagacaataactttgtttggtgaagtttgggga
attggtccagctacagccctaaaattatatgagaaaggacatcgtacattagatgatttg
aagaatgaagattctttaacaaatgctcaagtgataggattgaaatattttgatgatatt
aagacaaggatcccacggcatgaggctcaagagatggaattagttttacagaaagtagca
gaagatatcttacctgggatggttgttgtatgtgggggatcatatagacgtggaaaagct
tcctgtggagatttagacattgtaattacacatcctgatggaaaaagccataaaggtttt
ctgcaaaattatgtcaagcggttaaaagagatgaagttattaagggaagatttgattttt
agtacccatagtgaagagggtactgattcaggtgttgatacatattttggtctttgcact
tatcctggacgagagctcaggcgccgcatagactttaaggtatatccgagggacatatat
gcatttggactaatagcatggactgggaatgatgtgttaaatagaaggttgagactgcta
gcagaatctaaaggatatagacttgatgatacaggtctgtttccagctactcatggttca
ggcagtaaacggggttcaagaggtaccgcaagtctgaaattggagaccgagaaggaggtg
tttgattttctgggatttccatggcttgaaccttatgaaaggaatctgtaa
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