Gossypium arboreum (tree cotton): 108483118
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Entry
108483118 CDS
T05776
Name
(RefSeq) endoribonuclease Dicer homolog 3 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gab03036
]
108483118
Chromosome and associated proteins [BR:
gab03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
108483118
microRNA pathway
RISC loading complex
108483118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
DEAD
Helicase_C
ResIII
PAZ
SNF2-rel_dom
DND1_DSRM
SWI2_SNF2
AAA_22
HA2_N
Motif
Other DBs
NCBI-GeneID:
108483118
NCBI-ProteinID:
XP_017641828
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All DBs
Position
6:complement(118161970..118173336)
Genome browser
AA seq
1657 aa
AA seq
DB search
MHSPKEEQGEPLKRSFSEANSDPPDWMVLGDNETAKEEDPSSSSKPKDFNPRGYQLQVYE
VAKRRNIIAVLDTGVGKTMIAVMLIKDFGQAIESTESKKLIIFLAPTVHLVNQQFEYIKD
HTGLEVEQYYGAKGVDEWTLDCWEKETKEHDVLVMTPQILLDALRKAFLSLDMVSLMIID
ECHRATGNHPYAKIMKEFYHKSNNKPKIFGMTASPVVSKGVLSSNNCDGQMSELECVLDS
LIYTIEDRTEMEACVPSAKESCRFFDPAQFSSLDLKAKVEASWLKTDESLSNLQSSLQTS
HKDMDDKLKNLRKRLSNDHAKVLHCLDNLGLICAYEAVNICLENILDTTEESKAYRESVL
QYKNFLEEVQCRIGESLPLGDKNFLNSGFDYLKAVDLGYISPKLHELLQLFQSFGKTRQV
LCLIFVERIITAKVIERFAKKVSCLSHFMVSYMTGSNTSVDSLAPKIQKETLESFRSGKV
NLLFTTDVVEEGIHVPNCCYVIRFDLPKTVRSYVQSRGRARQNNSEFIMMLERGNMKQRN
QLYDIIRSEYSMTNLAIKRDPDSDPCLLKDHTFEETNVFIVDATGASVTTDSAVSLIHKY
CGKLPGDKYYTPKPNFQFMSSEGLYKCKLTLPVNAAVQTIVGPPSRNSHLAKQLVCLEAC
KQLHQMGALDDHLTPSIEEPSENACVSKGKDSGAGAGTTKRKELHGTSCIQALCGSWGEK
SDDAVFFAYKFDFKCNIITVVYSGFVLLIESKLADDVGNTEMDLFLIGKMVKASVSSCGQ
VHLNAEQMMKAKRFQEFFFNGLFGKLFVGSKSSGAPREFLLRDKSSSLWSPSRMYLLLPL
EDNSTDELRIHWPGITACTLAAEFLNKNSLLGTEQSDDGGSNPSLNSTGSPVTDCKETNI
IRFANSSVDANSLRNTVVLAIHTGRIYCIIEAVSDKTAESSFAETVDTVSSEFANFYEYF
YKKYNIVLKHPGQPLMLLKQSHNPHNLLVNFNDEGVSAKASQAGVVNEKPRFHVHMPPEL
LLVLDVPVSVLKSLYLLPSLMHRLESLMLANQLREEINFCSSNIDIPSSMILEALTTLRC
CESFSMERLELLGDSVLKYAVSCHLFLRYPNKHEGQLSARRSLAVCNSTLHKLGTDHKIQ
GYIRDSAFDPRRWVAPGQRVLRPVPCKCGVDSLEVPLDKKFQTEDPKVKVGKSCDRGHRW
FCSKTISDCVEALIGVYYLSGGLVAALHVMKWLGIDAEVDPSVVAEVINQASLRTYVPNY
KIHMIESKVGYNFSFKFFLQEALTHESVHESYCYQRLEFLGDSVLDLLITQYLYNHHTDI
DPGELTDLRSASVNNANFAQVAVRHDLHKHLQHCSTLLSNQISEYVQSFTESDNTTRLDP
SIKGPKALGDLVESIVGAILIDTNLNLGKVWRIVEPLLSPIVTPDKLELPPFRELNELCD
SLGYFIKEKCINKGEVVHAELLLQLDHDLLVGEGFDRSRKVAKGKAASCLLKHLENRGIS
RKKRKHDYVDSSQTMDDDSLEPTIPKMQRRAEIQLLDESKKACSATPATPVIVTVKTKKG
GPRTTLFELCKKLLWPMPSIKATEHKSSAPMEIGEGPERKKGFISFVSKIILNVPGYDII
ECTGDAKADKKSSSDSAALFMLYELEQRGKLIIEETL
NT seq
4974 nt
NT seq
+upstream
nt +downstream
nt
atgcattctccaaaggaggaacagggtgagcctctaaaacgaagtttcagtgaggcgaac
tcagacccacctgattggatggttctaggcgacaatgaaactgctaaggaagaagaccct
tcttcatcttcaaaacctaaggactttaaccccagagggtatcaattgcaggtatatgag
gtggcaaagagaagaaacataatagcagtgttggatacaggtgtagggaagacaatgata
gctgtgatgctcataaaggattttggtcaagctatcgagtctactgaaagtaaaaaattg
attattttcttggctcccactgttcatctagtcaatcagcaatttgaatatataaaagat
catactggtttggaagttgaacagtattatggagctaagggggttgatgaatggaccttg
gattgttgggagaaagaaacaaaggagcatgatgttctggttatgacaccccaaattcta
ttggatgccttaaggaaggcattcttgagtctggatatggtgtccttaatgataatagac
gagtgccatcgtgctactggcaaccatccatatgccaaaataatgaaggaattttatcac
aaatctaataacaagccaaagatttttggaatgacagcatcacctgtagttagcaaaggt
gtgttgtccagcaataattgcgacggtcaaatgtcagaacttgaatgtgttttggattcc
ttgatatacactattgaagacaggacggagatggaagcgtgtgttccttctgctaaagaa
agttgtagattttttgatccagcacaattttctagcttggatttgaaagcaaaggtagaa
gcctcttggttaaagacagatgagtcattgtcaaatttgcaaagctcactgcaaacttct
cataaagacatggatgataaacttaagaatctacggaagcgattatcaaatgaccatgct
aaggttctgcattgccttgataatcttggtctcatatgtgcttatgaggctgttaacatt
tgtctagagaacatccttgacaccacagaggaatctaaagcatatagagaaagtgtgttg
cagtataaaaatttccttgaggaagtccaatgtagaattggggagtctcttcccctcggt
gataaaaattttctgaattctggatttgactatttaaaggcagtagatcttggctatatt
tctccaaaactgcatgaactacttcaactgttccaatcatttggaaaaactagacaagta
ttgtgcctgatttttgttgaaagaattattactgctaaagtaattgaaagatttgcaaaa
aaagtaagctgtttatcacatttcatggtttcatatatgactggaagtaatacatctgtt
gattccctggcaccaaaaatacaaaaggaaaccttggagtcatttcgatctgggaaggtg
aatctattgtttactactgatgtggttgaggagggaattcatgtaccaaattgctgttat
gtgatacgtttcgacctgccaaagacagtccggagttatgtacaatctcgaggaagagct
aggcagaacaattctgaattcattatgatgcttgagaggggaaatatgaaacaaagaaat
caactatatgatataatcagaagtgagtattcaatgacaaatttggcaattaaaagagat
cccgattctgatccatgccttcttaaagatcatacatttgaagaaacaaatgtttttatt
gtggatgctactggagcttcagttactacagattctgctgttagcctcatccataaatat
tgtgggaagctccccggtgataagtattacacaccaaagccaaatttccagttcatgtct
tctgaaggattatataagtgtaaattaacattacctgttaatgcagccgttcaaacaata
gttggtccaccatctaggaattctcatttagcaaagcagcttgtatgcttagaagcatgt
aagcagcttcatcaaatgggtgccttggatgatcatctcactccatccattgaagagcct
tcagaaaatgcttgtgtttctaaaggaaaagattcaggtgcaggtgcaggaactacaaaa
cggaaggagcttcatggaacaagttgcatacaggcattatgtggaagctggggagaaaaa
tctgatgatgctgttttctttgcctataaatttgacttcaaatgcaatatcattactgtg
gtttattctggatttgttcttctaattgaatcaaagcttgcggatgatgtggggaatact
gaaatggatcttttcttgattggtaagatggttaaggccagtgtttcttcctgtgggcaa
gtgcatttgaatgcagaacagatgatgaaagcgaagcgctttcaggaatttttctttaat
ggcttgtttggtaagttatttgttggatctaaatcatctggagcaccaagagaatttcta
cttcgggataaatcaagctcattgtggagtccatcccgcatgtatttgcttttgcccctc
gaggataattcaactgatgaattgagaatacactggccagggataacagcttgcacatta
gctgcagaatttttaaataaaaattctttgttaggcactgagcaatctgatgatggtgga
agcaatccatcattgaacagtactggttcacctgtgacagactgcaaagaaaccaatata
atccgctttgctaacagttcagttgatgctaatagtcttagaaatacggtagtattggct
attcacactggaagaatctactgcatcattgaagctgtgagtgataaaactgctgaaagt
tctttcgctgaaactgttgatacggtctcatcagagtttgctaacttctatgaatacttc
tacaaaaagtacaatattgtgctgaaacatccaggacagcctttgatgctgttaaagcag
agccataacccgcacaacttgcttgtgaattttaatgatgaaggtgtatcagctaaggca
tcacaagctggcgtggttaatgaaaagcctcggtttcatgtccacatgccccctgagctt
ttacttgtccttgatgtcccagtgagtgttctaaaatcattgtacttactgccatcattg
atgcatcggctggagtccttaatgttggccaaccaactcagagaagagataaacttttgt
tctagcaacattgatattccaagctcaatgatcctggaagcactaacaacacttagatgc
tgtgaaagtttttcaatggaaaggctggaattgcttggggattcagttctgaagtatgct
gttagctgccacctctttcttagatatcccaacaaacatgagggacaattatctgccagg
cgttcgttggcagtttgtaattcaaccctgcataagttgggaactgaccacaaaatacag
ggatacattagggacagtgcttttgatccccgtcgttgggtagctccaggacaacgagtg
cttcgccctgttccttgcaagtgtggtgtggactctctagaagttcctttagataaaaaa
tttcagacagaagacccgaaagttaaggttggtaaatcctgtgatagaggccaccgatgg
ttctgttcaaaaaccatatcagattgtgttgaagctctcataggagtatactacttaagt
ggtggacttgttgctgcccttcatgtgatgaagtggctcgggattgatgccgaagttgat
ccctcggtggtagctgaagtcattaatcaggcatccttaagaacttatgtccccaattac
aaaatccacatgatagagtcaaaagttggctacaatttttctttcaagtttttcttgcag
gaggcattgacacatgaatctgtgcatgagtcctactgttaccagaggcttgaatttctt
ggtgattctgtgttggatttgctgatcacccagtatctctacaaccatcacactgatata
gatccgggtgagttgactgacctgcgctctgcttcggttaataatgcaaattttgctcaa
gttgccgtgcgccatgaccttcataagcatcttcaacattgttcaactttactatcaaac
caaataagtgaatatgtgcagtccttcactgaatctgataacaccaccagattggatccc
agcataaaaggtcccaaggctcttggagacctggttgaaagtattgttggggcaattctg
attgatacaaacctgaatcttggaaaagtctggagaattgttgaaccgttgttgtctcca
attgtaaccccagataagcttgagctgcctccattccgggaactgaatgaattatgcgac
tctcttggatattttattaaggaaaaatgtataaataagggggaagtggtgcacgccgag
cttctattgcagctagatcatgatttgttggtaggagaggggtttgatagaagtagaaaa
gtagcaaaaggaaaagccgcttcttgtctgttgaagcaccttgagaacagaggaatctcc
cggaagaaaaggaaacatgactatgtggattcaagtcaaaccatggatgatgactcgtta
gaaccaacaatccctaagatgcaaaggagagccgaaattcagttgcttgatgaatcaaag
aaagcatgcagtgctacgcctgccaccccagttattgtaacggtaaaaacgaagaaagga
gggccgaggaccactctttttgagctttgcaagaaactgctgtggcctatgcctagtatc
aaagcaacagaacacaaatcaagtgctcccatggaaattggtgaaggtcctgagaggaaa
aaagggtttatcagctttgtgtcgaaaatcatcctgaatgtcccaggatacgacattatt
gaatgcactggagatgcaaaagctgacaaaaaaagttcttcagactcagcagcactgttt
atgctttatgagcttgaacagcgcgggaagctcatcattgaggaaaccttataa
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integrated database retrieval system
