Gossypium arboreum (tree cotton): 108483671
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Entry
108483671 CDS
T05776
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108483671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108483671
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108483671
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108483671
mRNA degradation factors
3'-5' decay
Ski complex
108483671
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
AAA_22
DUF6985
PhoU
Motif
Other DBs
NCBI-GeneID:
108483671
NCBI-ProteinID:
XP_017642684
LinkDB
All DBs
Position
1:complement(10038288..10050527)
Genome browser
AA seq
1346 aa
AA seq
DB search
MKPIQAANGFSFRVGFSGYSGHLRVEPLYTEERDNPIKSLPDFVLPPAFPTETPESIEEH
IKEKYLLPRLDEDAFSPEKAGKQWDFDWFARAKIPLEPSMPRAIMVPVWELPFRRCKEGS
TEGKWEPNSTQVDVSDIIVGGETRGSFPRASNGAANDIVRGSINNRPFRPGGLEDQSLER
IFPYGASNGEWVREVLNGGPAQTIPPGFKQGLKLGDLMSHPCSWNVYKDQSAPDDTSVGN
LSELSVQFDDLFKKAWEEDVVELDKDEGHSTESDSVKSEAEANQVDVLNTLDTGSSALDE
ILSVEAEKVDNGRDKGGQQQKEAWAVSGGSEWIADQFYELVPDMAIEFPFELDTFQKEAI
YYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGKFDV
GLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERGVVWEEV
IIMLPRHINIILLSATVPNTIEFADWIGRTKQKKIRVTGTTKRPVPLEHCLFYSGELYKI
CEREDFIPQGLKAAKDAYKKKNSSATSGGTGSYSGSSTVQDGARGQKREPFNRGKQNKHS
GPQTFGNYTGTGWGNQSNGGGQNSWGSRRTTWLMLIDKLSKKSLLPVVIFGFSKNQCDKS
ADSISGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVVRVQNLLYRGIGVHHAGLLPI
VKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRPVLPGEYTQMAG
RAGRRGLDKIGTVIVMCRDEIPEESDLKHVITGTPTKLESQFRLTYIMILHLLRVEELKV
EDMLKRSFAEFHAQKKLPEQQQLLLRKLAQPKKTIECIKGEPAIEEYYEMHTEAEEHSEQ
IIKAVMQSSVAKQYLTPGRVVVVKSQSAQDHLLGVVLKSPPANNKPYIVLLLKPDVPSMT
QSPSDRSNLQDKKGADFHQGYVLLPKSKRGLEEDYRISAGPRKGSGIINITLPHRGAAAG
VTFEVREAENTEFLCICNSKIKLDLPGLLEFVSNPAFSHTVQQLLKLKSNGNKYPPALDP
LKDLKLKDMDLIKAYDKWTHLLQKMSENKCHECIKLEEHIKLAKEIKKHKEEVNALQFEL
SNEALQQMPEFQGRIDILKEIGYIDEDLVVQIKGRVACEMNSGEELICTECLFENQLDDL
EPEEAVALMSAFVFQQKNTSEPSLTSKLSQAKQRLYDTAIRLGNLQAEFKLPITPEEYAQ
ENLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFKTAAAIMGNSSL
YKKMESASNAIKRDIVFAASLYITGV
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgatccaagcagcaaacgggttcagtttccgagtcggattctccggctacagc
ggccacctcagagtcgagcctctctataccgaggagcgtgataaccctatcaaatccctc
cccgactttgttcttccacctgcgtttccgacggaaacacctgaatcgattgaggagcac
ataaaggagaaatatcttttgccaagattagacgaggatgctttctctcctgaaaaagct
ggaaagcaatgggattttgactggtttgccagggcaaaaataccattggagccatcaatg
ccaagagctataatggttccagtttgggaattacctttcagacggtgtaaggagggatca
actgaaggaaagtgggagcctaattcaacgcaggtggacgtatcagacataatagttgga
ggtgaaactcgtggatcctttccacgagcgtctaatggtgcagccaatgatattgtgaga
ggaagcattaataaccgcccttttcgtccaggaggcttggaggatcaatctttagagagg
atatttccttatggtgcatctaatggtgagtgggttcgtgaggtgctaaatggtggtcct
gctcagacaattcctccaggctttaagcaaggattaaaacttggtgatcttatgtcacat
ccttgctcatggaatgtttacaaggaccaaagtgcacctgatgacacatcagttggaaat
ttgagtgagttgtctgtacaatttgatgacttgttcaagaaagcttgggaagaggatgtt
gtagaacttgacaaagatgaagggcattcaacagaatcagattctgttaagtcagaagct
gaagccaaccaagttgatgttctcaacactcttgatactggatcatctgctttggatgag
attttgtcagttgaagctgaaaaagtagataatggcagggataagggtggtcagcaacaa
aaggaggcttgggctgttagtggaggtagtgagtggattgctgatcagttttatgaacta
gttcctgacatggcaattgagtttccttttgagttggatacattccagaaggaggctatt
tattatctggaaaagggggaatctgtttttgtggcggcacatacatctgctggaaagaca
gttgtagcagaatatgcatttgctttggcatcaaaacattgcactagagctgtgtatact
gctccaattaaaacaatcagcaaccagaagtatagagatttctgtgggaagtttgatgtt
ggccttctcacaggtgatgttagtttgagaccagaggcttcttgtctcatcatgacaact
gaaatcttaaggtcaatgctttatcgaggtgcagatattattcgcgatattgaatgggtt
atatttgatgaggtgcactatgtgaatgatgttgaaagaggtgtggtttgggaagaagtc
ataatcatgcttccaaggcatattaatatcatcctcctttcagccacggtgcctaataca
attgagtttgctgattggattggtcgcacaaagcaaaagaaaattcgtgtcactggaaca
acaaaaagaccagtcccactggagcattgcctgttttattctggagaactttacaaaata
tgtgagagagaagattttatacctcagggactgaaggctgctaaagatgcttacaagaaa
aagaattccagtgcaactagtggtgggactggttcatatagtggatcttctacagttcag
gatggggctagaggtcagaaacgtgaaccttttaaccgagggaaacaaaataagcattct
ggtccccaaacttttgggaattatactggaactggttgggggaatcaaagtaatggaggt
ggccagaatagttggggctctaggagaacaacttggttgatgcttattgacaagctttca
aagaagtcactattacctgtggttatatttggtttctcaaagaatcaatgtgataaatct
gctgacagcatctcaggaactgacctcactagtagttctgagaaaagtgagattcgagtt
ttttgtgataaagctttttcacggctgaagggatctgatcgtaacttgccccaggttgtc
agagttcagaaccttctttacaggggaattggtgtacatcatgcaggtttgcttccaatt
gttaaggaagttgttgagatgctcttctgtcgaggtgtgattaaggttttgttttcaaca
gagacatttgcaatgggggttaatgctccagccagaacggttgtatttgatacattaagg
aagtttgatggcaaggaatttagaccagtgcttcctggggaatacactcaaatggcaggt
cgtgctggcagaagaggacttgataaaattggtacagttattgtgatgtgtcgtgatgaa
atccctgaagagagtgatttgaaacatgttataactggaactccaactaagcttgaatct
caattccggttgacatacatcatgatcctgcatctccttcgtgtcgaagaactgaaggta
gaggacatgttgaaacgaagttttgctgaatttcatgctcagaagaaacttccagagcaa
cagcaactactattgcgaaagcttgcacagccaaagaaaactatagaatgtattaaaggt
gaaccagcaattgaagagtactatgagatgcatactgaagctgaggaacacagtgaacag
ataataaaagctgtcatgcagtcttctgtagccaaacaatatcttacaccagggagagtg
gttgtggtcaaatctcagtcagcccaggaccatttactaggagttgtcctgaaatcacct
cctgccaataacaaaccatatattgtgctacttcttaaacctgatgtgccatcaatgact
caaagtccctcagaccgaagtaacttgcaagacaagaaaggtgccgacttccatcaaggt
tatgtgctgctaccaaaatccaagcgtggtcttgaagaagattaccgcatatctgctggt
ccacgtaaaggttcaggtatcatcaacataacactgccacaccgtggtgctgctgcagga
gtgacttttgaggtcagagaagctgaaaatacagaattcttatgtatatgcaatagcaag
ataaaattggacctacctggacttcttgaatttgttagcaatcccgctttctcccacaca
gttcagcagctcttgaaattgaagtctaatggaaacaaatatcctcctgccttagatcca
cttaaagatctaaaattgaaagacatggatctcattaaagcatacgacaaatggacccat
ctactgcagaaaatgtcagagaacaaatgccatgaatgtataaaattggaggagcacatt
aagttagccaaagaaattaagaagcataaagaggaagttaacgctcttcaatttgaactg
tctaacgaagcactccaacagatgccagaatttcagggccggattgatattctgaaagaa
attggttatatagatgaagaccttgtggttcaaataaaaggtcgtgttgcctgtgagatg
aattcaggggaggaattgatatgcactgaatgtttatttgagaatcaacttgatgacctt
gaacccgaagaggcagtggctttaatgtctgccttcgtgtttcagcaaaagaatacttcc
gaaccttctcttacatccaaactctctcaggccaaacaaaggttgtatgacacagctata
agacttggtaaccttcaagcagagttcaaattaccaataacgcccgaggagtatgcacaa
gaaaatctcaagttcggtcttgttgaagtggtgtacgaatgggcaaagggaaccccgttt
gcagatatttgtgagctcacagatgttcctgaaggccttatagtgcgaacaatagtcagg
ctggatgagacctgtcgcgaattcaaaactgccgcagctataatgggtaattcatcgctt
tacaagaaaatggaatctgcttccaatgccataaaacgtgatatcgttttcgcggctagt
ttgtacattactggagtgtga
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