Gossypium arboreum (tree cotton): 108484229
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Entry
108484229 CDS
T05776
Name
(RefSeq) ubiquitin receptor RAD23b-like isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03420
Nucleotide excision repair
gab04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108484229
09124 Replication and repair
03420 Nucleotide excision repair
108484229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
gab03051
]
108484229
03400 DNA repair and recombination proteins [BR:
gab03400
]
108484229
Proteasome [BR:
gab03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
108484229
DNA repair and recombination proteins [BR:
gab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
108484229
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Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
CUE
UBA_3
TECR_N
Dsc3_N
UBA_RAD5A
MmeI_C
Ubiquitin_4
Motif
Other DBs
NCBI-GeneID:
108484229
NCBI-ProteinID:
XP_017643430
UniProt:
A0A0B0PQM7
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Position
6:18365553..18369466
Genome browser
AA seq
373 aa
AA seq
DB search
MKLTVKTLKGTHFQITVNPNDTVMAVKKNIEGIQGKDNYPCGQQLLIHNGKVLKDETTLA
DNKVSEDGFLVVMLSKSKSSGSAGASSAQPASSTPSTIAPVSNPTPTPEAPTQAPASMGT
TSASDAATANPNTNTHSQAASNLVAGSTLEQTIQQLMDMGGGNWDKETVTRALQAAYNNP
ERAVDYLYSGIPESAEVAVSVAHFPTNQTTETGAAPIAPVSGAPNSSPLNMFPQETLSGA
AAGGLESLDFLRNNQQFQVLRSMVQSNPQILQPMLQELGKQNPLLLRQIQEHHAEFLQLI
NEPLEGSEGDVFDQAEQEMPHAISVTPAEQEAIQRLEEMGFERALVIEAFLACDRNEELA
ANYLLENAGDFED
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaccgttaaaaccctcaagggtacccactttcaaattactgttaaccccaac
gacacggttatggctgtgaagaaaaacatagaaggtatacaagggaaagacaattatcca
tgcggccaacagcttttgattcataatgggaaggttttgaaagatgaaactactttagct
gataataaagtctccgaggatggttttcttgtcgtcatgcttagcaagagcaagtcctcg
ggttcagctggggcatcatctgctcagcctgcttcttcaactccatctacaattgcacct
gtctctaatcctacccctacccctgaagctcctacacaagcaccggcttcaatgggcacc
acatccgcttccgatgctgcaacagctaatccaaataccaatacccatagtcaagctgct
tccaatttagtcgctggaagtactcttgaacaaactatccaacaattgatggatatgggt
ggtggcaactgggacaaagaaacagtaactcgtgcacttcaggctgcttataacaatcca
gagagagcagtcgattatctatattccgggattcctgaatcagcagaagtcgctgtgtca
gtggctcattttcccacaaaccaaacgactgaaactggtgcagctcctattgctcctgtt
tcaggggctcctaattcatctcctttgaatatgtttcctcaggaaacactctctggggct
gctgctggtgggcttgaatccttggatttcctcagaaacaaccaacagttccaagtgttg
cgttcaatggtacaatcaaacccgcaaattctacagcccatgctacaggagcttgggaag
caaaaccccctgcttttaagacaaattcaagagcatcatgcagaatttcttcagctaata
aatgagcctctcgaaggttctgaaggggatgtatttgatcaagctgaacaagaaatgcct
catgctatcagtgttaccccagcagaacaggaggcaatccaacgacttgaagaaatggga
tttgagagagccctggtcattgaagccttcctggcatgtgaccggaacgaggaattggca
gcaaattacttattggagaacgccggagattttgaggattga
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