Gossypium arboreum (tree cotton): 108484579
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Entry
108484579 CDS
T05776
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
KO
K14829
pre-rRNA-processing protein IPI3
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gab03009
]
108484579
Ribosome biogenesis [BR:
gab03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
108484579
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML
Beta-prop_TEP1_2nd
EIF3I
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WDR90_beta-prop_4th
Beta-prop_IP5PC_F
ANAPC4_WD40
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_VPS8
Beta-prop_WDR75_2nd
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_IFT122_1st
WDR54
Beta-prop_SPT8
Beta-prop_LRRK2
Beta-prop_BBS7
Beta-prop_NWD2_C
Ge1_WD40
PEP5_VPS11_N
Beta-prop_DCAF12
Nucleoporin_N
Syntaxin_2
Motif
Other DBs
NCBI-GeneID:
108484579
NCBI-ProteinID:
XP_017643894
UniProt:
A0A0B0PI43
LinkDB
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Position
6:141543685..141546671
Genome browser
AA seq
444 aa
AA seq
DB search
MNVVIASSSIDGGIGCWDLQTGAEQLRYKTCASPPHGLTSVGCRFLACSQLRDPSATSGH
LLYWSWSKPQAQVKSFPAEPIKPLIANSDGAYIVGGGSSGDIYIWEVATGRLLKKWHAHY
RAITCLVFSEDDSLLISGSEDGCVRVWSLFMIFDDVRRQQVSHLYEYSFTEHTLRVTDIV
IGYGGGNAIIVSASEDRTCKVWSLSKGRLLRNVVFPSIIDAIAIDPGEHVFYAGSRDGKI
YIAALNAESSPSDNYGLHIIGSLTDQSKPVTCLAYSAEGDLLLSGSEDGMIRVWDVKTQN
ITRMFRHSKGPVNNIVIVRLPYPLGRAESKSQPSSRKHELSLPPPLEKYANSTDEDMDNK
AIVMLPDSIDLPSYLSSHLINDHIKQLQQQGSSAVAEMEAKRLKADCQRSMEMFQQLRKV
YDNLQEFCVNELLDEQTMEGSKGN
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtagtaatagcatcatcttcaatcgacggcggcatcggttgctgggacctacaa
acaggggcggagcaactccgttacaaaacttgcgcctcccctccacacggccttacctcc
gtcggttgccgtttcctcgcctgctctcaacttcgtgacccctccgccacctccggtcac
ctcctttattggtcttggtccaagcctcaagcccaagttaaaagctttcccgctgaaccc
attaaaccgcttattgctaatagcgatggtgcttacatagttggtggaggttcatcaggt
gatatttacatttgggaggttgctacgggtaggttattgaagaaatggcatgctcattat
agagcaattacatgtttagttttctctgaagatgattcacttctcatttccgggtccgaa
gatggatgcgttcgagtttggtcgcttttcatgatattcgatgatgttagacggcagcag
gttagtcatctttatgagtatagttttacggaacatactctgcgtgtaacagatattgtt
attggttatggcggagggaatgcaatcatcgtgtcggcttccgaggaccgaacttgtaag
gtatggagcttatccaagggaagattattacgaaacgttgtgtttccttccatcattgat
gcaattgcaatagaccctggtgaacatgtcttctatgccggcagccgagatggtaaaatt
tatattgctgctcttaatgccgaaagttcccctagcgacaactatggattgcacatcatc
ggttcactaactgatcaaagtaagccagttacatgcttggcatatagtgctgaaggagat
ttgctactatctggatcagaggatggcatgattcgagtttgggatgtgaaaacacaaaac
attactcgcatgttccgacattccaaaggccctgtgaacaatattgtcattgttagactt
ccatacccccttggtcgggcagaatcaaaatcacaaccttcctcaagaaagcacgaactt
tcactcccacctccgctagaaaaatacgcaaattcaaccgatgaagacatggacaacaag
gctattgttatgcttccagatagtatcgacctcccttcatacctcagttctcatctaatc
aatgatcacattaaacaacttcagcaacaagggtcttcggctgtggccgaaatggaagcg
aagagactgaaggctgattgtcaaagatcaatggagatgtttcaacaattgagaaaagtt
tatgataacttacaggaattttgtgtcaatgagctcttagatgaacaaacaatggaagga
tccaaagggaattaa
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