Gossypium arboreum (tree cotton): 108485396
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Entry
108485396 CDS
T05776
Name
(RefSeq) replication factor C subunit 4 isoform X1
KO
K10755
replication factor C subunit 2/4
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03030
DNA replication
gab03410
Base excision repair
gab03420
Nucleotide excision repair
gab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108485396
03410 Base excision repair
108485396
03420 Nucleotide excision repair
108485396
03430 Mismatch repair
108485396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gab03032
]
108485396
03036 Chromosome and associated proteins [BR:
gab03036
]
108485396
03400 DNA repair and recombination proteins [BR:
gab03400
]
108485396
DNA replication proteins [BR:
gab03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
108485396
DNA Replication Termination Factors
ELG1-RFC complex
108485396
Chromosome and associated proteins [BR:
gab03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
108485396
DNA repair and recombination proteins [BR:
gab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
108485396
Check point factors
HRAD17(Rad24)-RFC complex
108485396
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_lid_RFC1
RCF1-5-like_lid
AAA_22
Rad17
RuvB_N
Mg_chelatase
AAA_16
AAA_11
SLFN-g3_helicase
AAA_5
AAA_14
AAA_assoc_2
nSTAND_NTPase5
ResIII
AAA_24
nSTAND3
AAA_2
PhoH
AAA_28
AAA_25
AAA_19
AAA_7
AAA_30
DNAX_ATPase_lid
RNA_helicase
Parvo_NS1
DUF815
AAA_18
bpMoxR
NPHP3_N
TIP49
NB-ARC
Motif
Other DBs
NCBI-GeneID:
108485396
NCBI-ProteinID:
XP_017644716
LinkDB
All DBs
Position
6:135374210..135377958
Genome browser
AA seq
342 aa
AA seq
DB search
MAPVLQSSQPWVEKYRPKQVRDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSAQRQGGYPCPPFKIII
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSDEIMS
SRILHICDQEGLNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSSISSKDLLSVSGVI
PVEVVEALYAACKSGNFDLANKEVNNVIAEGYPVSQMLSQLFDVVVEADDVPDEQKARIC
KSLAEADKRLVDGADEYLQLLDVASNTMRALCNMPQEFSFET
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggcgccagtactgcagagctcccaaccttgggttgaaaaatatcggccaaagcaagtg
agagatgtggcacatcaagacgaggttgttcgagttctcaccaacaccctcgagaccgcc
aattgcccacatatgctcttttacggtccgcctggcactggcaaaaccactaccgctctc
gccattgcccaccagttatttggacctgaactctacaaatctagggtgttggagctaaat
gcaagtgatgaccgtgggatcaatgttgttcgtacaaagatcaaggattttgctgctgtt
gctgtaggatctgctcagcgtcagggaggttatccctgcccaccattcaagatcattatt
cttgatgaagcagattcgatgacagaagatgctcagaatgccttgagacgtaccatggaa
acttactcaaaagttacacgcttctttttcatatgtaactacataagcaggatcatagag
ccacttgcttcaagatgtgccaagttcagattcaagccactttcagatgaaatcatgagc
agtcgtatattacacatatgtgaccaagaaggcctcaatttagattcagaggcgctttca
acattaagttccatttcacagggtgatcttcgtcgggctattacgtacttgcagggagct
gcacgcctatttggatcatcaatttcttccaaagatctacttagtgtgtcaggggttatc
cctgtggaagttgttgaagcactttatgctgcatgcaaaagtggtaactttgatttggca
aacaaggaagtcaataatgtaattgcagaaggctatccagtttctcagatgctttctcag
ttatttgatgtggttgttgaggcagatgatgtaccagatgaacagaaagctagaatttgc
aagagtttggctgaagcagataagcgtctagttgatggtgctgatgagtatttgcagctg
ctggatgtggccagtaacacaatgcgagctttgtgtaacatgccacaggaattctctttt
gaaacttag
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integrated database retrieval system
