Gossypium arboreum (tree cotton): 108485439
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Entry
108485439 CDS
T05776
Name
(RefSeq) polyadenylate-binding protein 3 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03015
mRNA surveillance pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108485439
09123 Folding, sorting and degradation
03018 RNA degradation
108485439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108485439
03041 Spliceosome [BR:
gab03041
]
108485439
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108485439
mRNA cycle factors
Stress granule specific factors
108485439
Spliceosome [BR:
gab03041
]
Complex C
Other components
Complex C specific factors
108485439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_RdRP1_2
RRM_3
RBD_DEAH11
RRM_7
PABC_AtC3H46
DM9
YflT
RRM_YTH1
Motif
Other DBs
NCBI-GeneID:
108485439
NCBI-ProteinID:
XP_017644764
UniProt:
A0ABR0PM43
LinkDB
All DBs
Position
6:80940992..80944627
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AA seq
644 aa
AA seq
DB search
MATATTAVPVASATAGGSAVGSGNMNVSLYVGDLEENVVEGQLYDLFGQVGTVLSVRVCR
DQNKRSSLGYAYVNYSNYQDAAHAKEMFNFTPINGKPIRIMFSQRDPIIRRTGYANVFIK
NLDPAIDNKALYDIFAAFGNVLSCKVATDRNGQAKGFGYVQFENDEAAQNAIKRLNGMLI
NDKQVYVGRHVRQQERVPANVTPKFTNVYVKNLSETTSDEDLKKVFGTYGTITSVVVMKD
QNGKSRCFGFVNFQSPDAAAAAVEKLNGMKNDDKTWYVGRAQRKAEREAELKAKFEQERT
SRYEKLQAANLYLKNLDDSIDTEKLKELFSEFGTITSCKVMLDPQGVSKGSGFVAFSIPE
EASKALNAMNGKMIGKKPLYVAVAQRKEERKARLQSYFAQLRTQGAMSPLASGFPGYHSG
PHRLDPQQLYYGQGSPGLLHPQPAGYGYQQQLIPGIRPGVTPNYIMPYNLQRQQGQPGQR
MGVRRGGNSQQMLQQQVLHRNNNEGLGYMGNARDGVDQSTVTQSVVGPVLPLPYGVSRMP
VNSVEVQRPNPVHISTLISALASASPRERNKMLGEQLYPLVQGFEPEHARKVTGMLLEMD
QTEVLHLIESPDALKEKVAEAMAVLRDSAAGESDASKELVIGTD
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggccacgacggcggttcctgtggcctccgcaacggcagggggctcggcggtg
ggaagtggtaatatgaatgtgtcgctttacgtgggggatctggaggagaacgtggtggaa
gggcaactgtatgatctgtttggccaagttggaactgttctttccgttagagtttgtagg
gatcagaataagcgatcttctctaggttatgcttacgtcaattacagcaattaccaagac
gctgcacatgccaaggaaatgtttaacttcactcccattaatggaaaacctatacgaatt
atgttttctcaacgcgatcctattattcgtaggactggatatgccaatgtctttatcaag
aacctggacccagctattgataacaaggcattgtatgacattttcgctgccttcgggaat
gtactttcttgcaaggttgctactgatagaaatgggcaagcaaaaggattcggctatgtt
cagtttgaaaatgatgaagccgcacagaatgcaatcaaaaggttaaatggtatgctaata
aatgataaacaagtttatgttggacgtcatgttagacaacaagaacgggtgccagccaat
gtgacgccgaagttcactaatgtttatgtaaaaaatttgtcggaaacaacaagtgatgag
gaccttaagaaagtttttggaacttatggtaccatcaccagtgttgttgtcatgaaggac
cagaatggtaagtccagatgttttggttttgtgaactttcagagcccagatgcggctgcc
gctgctgtcgagaagttaaatgggatgaaaaatgatgacaagacgtggtatgtgggaagg
gctcaaaggaaagcagaaagggaagcagagttgaaagccaaatttgaacaggaaagaact
agtagatatgaaaaactacaagctgcaaatttgtatctgaaaaatctggatgacagcata
gatactgaaaaactgaaggagttattttccgagtttggaacaattacctcatgcaaggtt
atgcttgatccacaaggagttagtaagggctctggttttgttgccttttctatacctgaa
gaagcttcaaaagctttgaatgcaatgaatggaaagatgattggaaagaagcctctgtat
gttgctgtcgctcaacgcaaagaagaaagaaaagctagattacagtcgtattttgctcaa
cttcgtacacaaggtgccatgtcacctttggcatcagggtttcctggatatcattctggt
cctcataggcttgatcctcagcagctatattatggtcaaggtagtcctggtctgttacac
cctcagcctgcaggatacggttaccagcagcaactcatacctggaatccgtcctggagtc
actccaaattatattatgccatacaacctccaaagacaacaaggacaaccaggtcaaagg
atgggtgttcgtcgaggtggaaactcccaacaaatgctgcagcaacaggtgctgcaccgt
aataacaatgaaggtttgggatacatgggtaatgcaagagatggtgtggatcaatctaca
gttacccaaagcgttgtaggccctgtcctgccgttaccatatggtgtttcaaggatgcca
gtaaactctgttgaagtgcaacgacctaacccagtgcacatatcgacactcatatctgct
ttagcttctgcttcccctagagaacgtaacaagatgttgggagaacaactttatccgctg
gtgcagggttttgagcctgaacatgcgagaaaggtgactgggatgttgctagagatggac
caaacagaggttctccatctcatcgagtctccagatgctttgaaggagaaggtggctgag
gcaatggctgtccttcgggattctgcagctggagaatctgatgcgagtaaggagttggtc
attggaactgactga
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