Gossypium arboreum (tree cotton): 108485808
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Entry
108485808 CDS
T05776
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
108485808
Enzymes [BR:
gab01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
108485808
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
EMC7_beta-sandw
CarboxypepD_reg
RhgB_N
AHSA1
Endotoxin_C
Motif
Other DBs
NCBI-GeneID:
108485808
NCBI-ProteinID:
XP_017645142
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All DBs
Position
6:complement(139710161..139717515)
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AA seq
649 aa
AA seq
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MPLIGVQLHTQDTHVMIDNGILQLTLSNPDGIVTGIRYNGIDNLLEVLNDEDNRGYWDLV
WNSPGTPGTTGSFDVIKGTSFKVIVENEDQVEVSFTRTWDSSQDGKLVPLNIDKRFIVLR
GCSGFYTYAIYEHLKDWPGFNLAETRIAFKLRKDKFHYMAMADNRQRYMPLPDDRLSGRG
QALAYPEAVLLVNPVEPDLKGEVDDKYQYSCDNKDSQVHGWICTTDQPAVGFWMVTPSNE
FRSGGPVKQNLTSHVGPTTLAVFLSAHYTGEDLVPKFSAGEAWKKVFGPVFIYLNCTMDG
DEPLSLWEDAKQQMIIEVQSWPYTFPASDDFPKSNQRGNVNGRLLVNDRYVSDDNIPANG
AYIGLAPPGNVGSWQRECKDYQFWTKTDINGYFLINDIRPGDYNLYAWVPGFIGDYQYSA
AITITPGSEIEVGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPDPKYINKLYVNHPDRF
RQYGLWERYAELYPNEDLVYTVGTSDYKKDWFFAQVTRKIDTNKYQGTTWQIRFKLDNVD
QGSSYKLRVAIASATFSEFQVRINDPKTNPLFSSGLMGRDNSIARHGIHGLYWLYNVDVP
GKLLVQGDNTIFLTQPRSSSPFQGILYDYIRLEGPSKLSSKEEYMSSTL
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgccacttattggggttcagctccacactcaagacacccatgtgatgatagataatggc
atactccaactgactttatcgaaccctgacgggatcgtgaccggcattcgatataacggc
atcgataatttactagaagttctaaatgatgaagacaatcgagggtattgggaccttgtt
tggaactcaccaggaactcctggtactactggctcctttgacgtgattaaaggaacgagt
ttcaaagtaatagtggaaaatgaggatcaagttgaggtttctttcacaagaacttgggat
agttcccaagatggcaagcttgttcctttgaatattgacaaaaggttcatagtgttgcgt
ggttgctcaggcttttacacttatgccatttatgagcacttaaaagattggcctggtttt
aaccttgccgaaaccagaatcgcattcaagctcagaaaagacaagtttcactacatggcc
atggcagacaataggcaaaggtacatgccattgcctgatgaccgtttatcaggaagagga
caagccctggcttacccagaagctgttctcctcgttaatccagtggagcccgatctcaaa
ggagaggtggatgacaagtaccaatattcatgtgataacaaagacagccaagtccatggc
tggatctgcaccaccgaccaaccagcagtagggttctggatggtcacacccagcaatgag
ttccggtccggtggtccagtcaaacagaacctaacctctcatgttggtcctacaaccctt
gctgtgtttctgagtgctcattataccggggaggatttggtgccgaaattcagtgccggt
gaggcctggaagaaagtgttcggccctgtttttatctatcttaattgtacaatggacgga
gatgagccgctttcgctttgggaggatgctaaacaacagatgataattgaagttcaaagc
tggccttatacatttccagcctcagatgatttccctaaatccaaccaacgtggaaatgtc
aacggtaggcttcttgtcaatgacagatatgttagtgatgacaacataccagccaatgga
gcttacataggattggctccaccaggcaatgttgggtcttggcaaagagaatgcaaggac
tatcaattttggaccaagacagacataaatggttattttttgatcaatgacataagacct
ggtgattataacctttatgcatgggttcctggctttattggagattatcaatatagtgct
gccattaccataactccaggtagtgaaattgaggtcggcgatctggtatacgaacctcca
cgaaatgggccgacgttgtgggaaataggaattcctgatcgttctgctgcggaattttat
gtcccagatcctgaccctaagtacatcaacaaactttatgtcaaccatcctgataggttt
agacagtatggactttgggaaagatatgcagaattgtatcccaatgaagatttagtttac
acggttggcactagtgactataaaaaagattggttctttgcccaagtaaccaggaaaatt
gatactaacaagtatcaaggaaccacatggcaaattagattcaaacttgacaatgtagat
cagggtagttcatataaattaagagtggcgattgcttctgcaactttttccgaattccag
gttcgaatcaatgatccgaaaacaaatcctttgttttcgagcgggctaatggggagggat
aactcgatagcaaggcatggaattcatggactctactggctttacaatgtagatgtacct
ggaaaattgttggttcaaggtgacaacactatcttccttacgcaaccgcgaagtagtagt
ccttttcaaggtattttgtatgattacattcgactcgaaggtccctcaaaattaagttct
aaggaagaatatatgtcgagcacattgtaa
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