Gossypium arboreum (tree cotton): 108486035
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Entry
108486035 CDS
T05776
Name
(RefSeq) polyadenylate-binding protein 8
KO
K13126
polyadenylate-binding protein
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03015
mRNA surveillance pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108486035
09123 Folding, sorting and degradation
03018 RNA degradation
108486035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108486035
03041 Spliceosome [BR:
gab03041
]
108486035
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108486035
mRNA cycle factors
Stress granule specific factors
108486035
Spliceosome [BR:
gab03041
]
Complex C
Other components
Complex C specific factors
108486035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
RRM_7
RRM_Nup35
SET_assoc
RRM_RdRP1_2
RRM_MARF1
DUF5062
GH97_C
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
108486035
NCBI-ProteinID:
XP_017645344
UniProt:
A0ABR0MBE6
LinkDB
All DBs
Position
13:7670057..7675082
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AA seq
648 aa
AA seq
DB search
MAQIQVQGQNGSVNNGAGGGNNQFVPTSLYVGDLDSSVTEAQLYDYFAHVGPVLTVRVCK
DLSTRRSLGYGYVNYGNPQDAARALDLLNFTLLNGKPIRIMYSNRDPSLRKSGAGNIFIK
NLDKGIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEQLNGMLM
NDKQVYVGPFVRKQERDSSISNVKFNNVYVKNLSESTSDDDLKTIFGEFGLITSAVVMRE
PDGKSKGFGFVNFENADDAARAVESLNGKKFDDKEWYVGKAQKKSERELDLKLRFEQSMK
EAADKFQGANLYVKNLDDSISDEKLKELFSQYGIITSCKVMRDTSGISKGSGFVAFSTPE
EASRALAEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQMRPVTMSPSVAPRMPMYPPG
GPGLGQQIFYGQAPPAMFPQPGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGQRPGGR
RAGAGQQSQQPVPLMQQQMLPRGRVYRYPPGRGLPDVSMPNIAGGMLSVPYDMGGMPMRD
ASISQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVL
HLLESPEALKAKVAEAMEVLRTVAQQQQTGGAAADQLASLSLSDNLVS
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagattcaagtccaggggcaaaatgggagtgttaacaatggagctggtggaggg
aacaaccagtttgtaccgacgtcgctttatgttggggatctggattcaagtgtgacggaa
gctcagctttatgattactttgcccacgtgggtccagtccttacggttcgggtttgcaag
gacttgtcaacccggaggtctcttggttatggttatgtcaattatggaaatccacaagat
gctgcaagggcattggaccttctgaacttcactcttctgaatggaaagcctatcaggatt
atgtattctaatcgagaccctagtcttcgtaaaagtggtgctgggaatatttttatcaag
aatttagacaagggaattgaccacaaagccttgcatgatacgttttctgcatttgggaac
attctctcttgcaaggtagccacagactcctctggtcagtcaaaaggttatggctttgtt
caatttgacaatgaggaatctgcccaaaaagcaatagagcagctgaatggcatgctaatg
aatgataagcaagtctatgtgggcccctttgttcgcaagcaggaaagagacagttctatc
agcaacgttaaatttaacaatgtctatgtgaagaatctctcagaatccacaagtgatgac
gatttgaaaaccatttttggcgaatttggtctgattactagtgctgtggtgatgagagaa
ccggatgggaaatccaagggctttgggtttgtaaactttgagaacgcagatgatgctgct
agggctgtggagtctctgaatggaaagaaatttgatgataaggagtggtatgttgggaaa
gcgcaaaagaaatctgaaagggagcttgatctgaaacttcgatttgagcagtcaatgaaa
gaggcagcagataagtttcaaggagcaaacttgtatgttaagaatttggatgacagcata
agtgatgaaaaacttaaagagctattctctcaatatggtatcataacgtcatgcaaggtt
atgcgagatactagtgggataagcaaaggatcagggtttgttgcattttcaactccagaa
gaagcgtcaagagctcttgcagagatgaatggcaaaatggttgtcagcaaacctctttat
gttgcactagctcaaaggaaggaagataggagagccaggttacaggctcaattttctcaa
atgcgaccagttacaatgtcaccttcagttgctcctcgtatgccaatgtacccacctggt
ggtccaggtcttgggcagcaaatattttatggtcaagcacctccagcaatgtttccgcag
cctggattcgggtatcaacagcagctcgtccctggtatgaggcctggtggagctcccatg
ccaaatttctttgtaccaatggttcaacaaggccaacagggtcagcgtcccggtggtaga
agggctggggctggtcagcaaagtcagcaaccagttccattaatgcagcagcagatgcta
ccgcgagggcgggtctatcgctatccaccagggcgtggtctacctgatgtttcaatgcct
aacattgctggaggcatgctttctgttccatatgatatgggtggcatgccaatgcgtgat
gcatcaatttctcagccaattccgataggagccttggcctcagccctagcaaatgctaca
ccagatcagcagagaacgatgctgggagagaatctttatcctctagttgaacagctggag
cctgatgcagcagctaaagttacagggatgcttctggagatggatcagaccgaggttttg
catttgctcgagtcaccagaagctctaaaagcgaaggttgctgaagcaatggaggttctt
agaactgtggctcagcagcaacaaactggtggtgctgccgctgatcaactggcttcattg
tcattaagtgacaaccttgtctcctga
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