Gossypium arboreum (tree cotton): 108486087
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Entry
108486087 CDS
T05776
Name
(RefSeq) protein REDUCED CHLOROPLAST COVERAGE 3 isoform X1
KO
K03255
protein TIF31
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
gab03012
]
108486087
Translation factors [BR:
gab03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108486087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_10
eIF3_p135
TPR_NPHP3
TPR_2
CLU_N
TPR_9
TPR_8
CLU
TPR_1
TPR_MalT
PAM2
Motif
Other DBs
NCBI-GeneID:
108486087
NCBI-ProteinID:
XP_052886061
LinkDB
All DBs
Position
6:complement(67882876..67899007)
Genome browser
AA seq
1680 aa
AA seq
DB search
MAPRSGKSKSSKAKAEKKKKEEKIVPYVLDITVITPYETQVVLKGISTDKILDVRRLLAS
HVETCHLTNYSFAHEVKGKRLSDKVEMVTLKPCLLKMVEEEYAEEAEAVAHVRRLVDIVA
CTSRFSRPKRPRSQSSSAPSDSKAKKVNRPNNYALPPAPSDGGTTPIPENLDMAAIHPTP
KLSEFYDFFSFSYLSPPILNLRKCDPKDVEGWRDGDYFVMQIKICNGKLIQVVASIKGFY
TVGKHFFKSHSLLDLLQNLSQAFANAYESLMKAFVGHNKFGNLPYGFRANTWLVPPPVAE
CPANFPSFPSEDEEWGGNGGGQGRNGEYDLRPWATDFSILASLPCKTEEERIIRDRKAFL
LHSQFIDVSIFKAVAAIQHVMNSRLNVKGHPDSVLHEHRTGDLSILVKHDSEDVKLECGV
KVAGHQSSGMTTSETARRNLLKGITADENVVVHDTSALGTVIVRHCGYTAIVSVVGDVKK
EKSGARDIEIDDQPDGGANALNINSLRVLLHKSSPAEVTGGGQSNQSNLIDSKSSRYLVQ
RVIKENLTKLEENSAAPERTIRWELGSCWVQYLQKQETSTDATSKGLANDQEAEAAVKGL
GKQFKFLKKRDKKPSNISSTVEKEDNDSELCSEDVKSNLGQESNVELSSEMELKHLISKE
AFSRLEQSGTGLHLKSAEELIKMACKYYDDIALPKLVTDFGSLELSPVDGRTLTDFMHLR
GLQMHSLGRVVELSEKLPHIQSLCIHEMITRAFKHVVKAVVASVEKIEDLPVVIASTLNF
LLGSCGVDVNASSANDDYFLKLTWLRKFLGAKFGWKLKDEFQHLRKLSVLRGLCYKIGLE
LVPRDYDMECQEPFRSCDIISMYPVCKHVGCSSADGRTLLESSKIALDKGKLEDAVNYGT
KALTKMIAVCGPYHRTTASAYSLLAVVLYHTGDFNQAAVYQQKALDINERELGLDHPDTM
KSYGDLSVFYYRLQHMEMALKYVNRALFLLHFTCGLSHPNTAATYINVAMMEEGMGNVHV
ALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLKILQAKLGP
DDLRTQDAAAWLEYFESKALEQQEAARTGTPKPDASIASKGHLSVSDLLNYISPDQDSKG
SDVQRKQRRSKVLQISDKTHDTRNNLQTDGAVFVDATDKATATVDINEIGTLSSIHPEEP
EETDNIYSIEPTVTTEVVEDTTSDEGWQEANSKGRSGNATGKKYGRKKPVFAKLKVNGCE
YSNGRESGSRRDIISPAGKTVPKNIIKEMQTVKQSKSSSLNPRGISIGLPASVSRGSSPS
ANLSAIASKSLSYKEVAAAPPGTVLKPLLEPSEGKMEQSMCAETANVEDGNNISVVDDVV
DDNDETEGTHDTESQSEETAPEIDKVSSCSQEKGLEAKGSKLSASAEPFNPGALYHPLNS
VSVTCVYDVTASQGMLAEPVVPPVAARVPCGPRSTLFYTNNNSYGSFLRYQTPILEQNGF
GSPRVMNPHAPAFVPSKIWQMTGTGDLSVSEEAMNTEVKEVDKKSSREVNGSNPKKSSAE
EKSELARQILLSFIVRSAKQNMDGACEALINDKRLNHSQNSSDAVTRDTAIIKFLYGNEG
KDLDSQSGSNEEPKALDENKKKPGDGEGFTVVKKRRKNRQQLTNVVTGLYNQQSICASAR
NT seq
5043 nt
NT seq
+upstream
nt +downstream
nt
atggccccaaggtcagggaaaagcaagtcaagtaaagcaaaagctgagaagaagaagaaa
gaggagaaaattgttccttatgttcttgacatcactgtcattactccttatgaaactcaa
gttgtgctcaagggtatttccactgacaagatacttgatgtaagaaggctgttggcttct
catgtggagacatgtcaccttacaaactattcttttgctcatgaggtcaaagggaagaga
ttgagtgacaaagtggaaatggttaccttgaaaccatgtttgctcaaaatggttgaagag
gagtatgcggaggaagctgaggcggtggctcacgtgcggagactggtagatattgtagca
tgcacctccaggttctcgaggcctaaacgtccccgatcacaatcctcatcagcgccgtca
gattcaaaagccaaaaaggtcaataggcccaacaactacgctcttccacctgcgccctcg
gatggcggaacgacgccgattccggagaacttggacatggctgccattcatcccaccccg
aaattatcggaattttacgatttcttctcattctcttacctctctcctccgattctcaat
ttgaggaaatgtgaccccaaggatgtagaagggtggcgtgacggtgactattttgtaatg
cagataaaaatctgcaacgggaagttgatacaagtggttgcatcaataaaagggttttac
actgttggaaagcacttcttcaagagccactctttgttagatcttttgcaaaacctcagt
caagcctttgccaatgcatatgaatcccttatgaaggcatttgtaggacacaataagttt
ggtaatcttccctatggatttcgggcaaatacatggcttgtccctccccctgttgctgag
tgtccagcaaacttcccctctttcccatcagaagatgaagaatggggtggtaatggtgga
ggtcagggaagaaatggtgaatatgatcttcggccatgggctacagatttttcaatttta
gccagccttccttgcaaaaccgaagaggagaggattattcgagatcgcaaggcctttttg
ctccatagccagtttattgatgtctcaatctttaaagctgttgctgcaatacaacatgtc
atgaattccagattaaatgtcaagggccatccagactctgtccttcatgagcatcgcaca
ggtgacttgtccattttagtaaaacatgactcggaagatgtgaaacttgagtgtggggta
aaggttgctggccatcaatcatctggcatgactaccagtgaaactgctcgaaggaattta
cttaaagggataactgcagatgagaatgtagttgttcatgatacttctgcattgggcact
gtcattgttagacactgtgggtacactgcaattgtaagtgttgttggtgatgtgaagaag
gaaaaatctggtgctcgggatattgaaattgatgatcaaccagatggaggagcgaatgct
cttaatattaacagtctaagggttttacttcacaaatccagccctgcggaagtaactggt
ggaggacagtcaaatcagtccaacttgattgattccaaatcttctagatatcttgttcag
cgagtaattaaagagaacttgacaaaattagaggagaactcagctgcccctgaaaggact
attagatgggaacttggttcttgttgggtgcagtatctacaaaagcaggaaacttcaaca
gatgctacttcaaaaggacttgcaaatgatcaggaggctgaagctgctgtcaagggtctt
ggaaagcagtttaaatttttaaagaaaagggacaaaaaaccaagtaatatcagtagcaca
gttgagaaggaagacaatgattctgagttatgcagtgaggatgtgaagtctaatctagga
caggaaagcaacgttgagttgagcagtgagatggaattgaagcacctgatttctaaagaa
gccttctcacgtcttgaacaaagtggaacgggtcttcacttaaagtcagctgaggagctt
attaagatggcatgcaagtattatgatgacattgctttaccaaagctggtaacagatttt
ggatcgcttgaactttctcccgttgatggtcgtacgctaactgacttcatgcatttaagg
ggattacagatgcactctttgggtcgtgtggttgaactttctgagaagcttcctcacata
caatcactttgcatccatgagatgattactcgagctttcaagcatgtagtgaaagcagtt
gtggcatcagttgagaaaattgaggatttacctgtggttatagcttcaaccctgaatttc
ttacttggaagttgcggagtggatgttaatgcctcaagtgcaaatgatgactattttctc
aaactgacgtggttaagaaagttccttggagcaaaattcggttggaaactgaaagatgaa
ttccaacatttaaggaaactttctgttcttcgcggactttgctataagattggtctagag
ttggttcctagagattatgatatggaatgccaagaaccgttcagaagttgtgatattatt
agcatgtatcctgtttgtaagcatgtaggatgctcttctgctgatggcagaacattgttg
gagtcatccaagattgctcttgacaaaggaaaactagaggatgcggttaactatgggaca
aaggcattgacaaagatgatagctgtatgcggtccttatcatcgaactactgcaagtgct
tacagtcttcttgctgttgttctctaccatactggagatttcaatcaggcagccgtatat
caacagaaagctttggatattaatgagagggagcttggtcttgaccatccagataccatg
aaaagctatggggatctttctgtattctattatcggctccaacacatggaaatggctttg
aaatatgtaaaccgtgccttattccttcttcattttacttgtggattgtctcaccctaac
actgccgcaacatatataaatgtggctatgatggaagaaggcatgggaaatgttcatgtt
gctcttagatatctacatgaagctcttaagtgcaaccagagactgcttggagctgatcac
atacagactgccgcaagctatcatgctattgccattgctctttcattgatggaagcttat
tcattaagtgtgcaacatgagcaaactacactcaagatacttcaagcaaaactcggacca
gatgaccttcgtacccaggatgctgctgcctggcttgaatattttgaatcaaaagctcta
gaacagcaagaagcagcacgaactggaactccgaagccagatgcatcaattgcaagcaaa
ggtcatcttagtgtatcagatctcctcaattacattagtcccgatcaagattctaaagga
agcgatgtgcagaggaagcagcggcgttccaaggtgttacagattagtgataaaacccat
gatacacgtaacaacttacaaacagatggtgctgtgtttgttgatgcaacagataaagct
acggcaactgtggatattaatgaaataggtaccctgtcttctattcatcccgaagaacca
gaagaaaccgataatatttatagtattgagccaactgttacaactgaagttgttgaagat
acaacttcagatgaagggtggcaagaagccaattcgaaaggtcggtcaggaaatgccact
ggaaagaagtatggaaggaagaaaccagtttttgcaaagctaaaggtgaatggttgtgaa
tattcaaatggtagagagagtgggagtaggcgagacattatctcaccagcaggaaaaact
gtcccgaagaacattataaaggaaatgcaaacagtaaagcaatctaagtcttccagcttg
aatcctagagggatttcaattggtttacctgcttctgtttccagaggttcctccccttca
gcaaatcttagtgccattgcttcaaaatcactttcttacaaagaagtagctgcggcacct
ccaggtacagttctaaagccattattggaaccaagtgagggaaaaatggaacagtcaatg
tgcgccgagacagcaaatgtagaggatgggaacaacatctctgttgtcgatgatgtagtg
gatgacaatgatgaaactgaaggaactcatgatactgaaagtcagtcggaagaaactgct
cctgaaattgataaggtgtcttcttgtagtcaggaaaaaggtttagaagcaaaagggagt
aagctatcggcatcagctgaaccattcaatcccggagcactctatcacccgttaaactca
gtttctgttacatgtgtttatgatgtaacagctagtcaaggcatgcttgctgagcctgtt
gtacctccagttgctgctcgagttccttgcgggccaaggtcgacattgttttacacaaac
aataattcttacggtagctttcttagataccaaactcctattttggaacaaaatggattt
ggatctccgagagttatgaaccctcatgcacctgcgttcgttccaagcaaaatttggcaa
atgactggaactggtgatttgagtgtctctgaagaagctatgaacacagaagtgaaggaa
gttgataagaagtcgagtagggaagttaacggttctaatccaaaaaagagcagcgcggag
gagaaatctgagctcgcaaggcagattttgcttagcttcattgtccggtccgccaagcag
aacatggatggtgcatgtgaggctttaatcaatgacaaaaggctcaaccattcccaaaac
tcttcggatgcagttacaagagacactgcaataataaaatttctatatgggaatgaagga
aaggacttggattctcaatccggtagcaatgaagaaccaaaagcgttggatgaaaataaa
aagaaacccggagatggcgaaggctttacagttgtaaagaaacggcggaaaaacaggcag
cagcttactaatgtagtcactgggctatataatcagcaatccatatgtgcttctgcaagg
tga
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