KEGG   Gossypium arboreum (tree cotton): 108486115
Entry
108486115         CDS       T05776                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    108486115
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gab03021]
    108486115
Enzymes [BR:gab01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     108486115
Transcription machinery [BR:gab03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     108486115
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3 GMC_oxred_C
Other DBs
NCBI-GeneID: 108486115
NCBI-ProteinID: XP_017645439
LinkDB
Position
6:4800999..4816444
AA seq 1969 aa
MEENSSSVILDGEIVGIKFCLASPKEILTASVSGFPINHVSQLSNSYLGLPLEFGKCSAC
GTSEPGQCEGHFGYIELPIPIYHPSHISELKRLLSLLCLKCLKLKNKFQMKSGSVAERLL
SSCCENTPQVSIKEVKTTDGACYLELKQPSRQSKTNWNFLERYGFRYGDHHTRTLLPCEV
VEILKRIPAQTRRKLSGKGFFPQEGYILQYLPVPPNCLSVPDVSDGISVMSSDLSTSMLR
KVLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQYLQVRGTVKASRSIDARYGVNKDAS
DSSTKAWLEKMRTLFIRKGSGFSSRSVITGDPYKKVNEIGIPSEIAQRITFEERVNMHNM
RYLQNLVDNKLCLTYRDGGSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHK
HSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLSAKAEVYELFSVEKQLL
SSHSGNLNLQLATDSLLSLRVMLKTFLFKKADAQQLSMFLSSALPEPAFLKGNHVAPCWT
AFQILQTAFPACLDCSCDRYLIGKSDILKVDFNKDLMQSVINEVVASIFYEKGPKEVLNF
FDSLQPLLMENIFAEGFTVCLEDFSVSREVIENIQKDIQVISPLLYQLRSTYNELVELQM
ENHIRVAKAPIADFILKTSSLGNLIDSRSDSAVNKVVQQIGFLGMQLSDKGKFYSKTLVE
DVAHQFQSIYPSDAIDYPSAEFGLIKSCFFRGLDPYEGIVHSISTREVMVRSTRGLSEPG
TLFKNLMAILRDVVICYDGTVRNVSSNSIIQFQYGLSARTRPQFPAGEPVGVLAATAMSN
PAYKAVLDSSPSSNSSWELMKEILLCKVSFKNDPIDRRVILYLKDCDCGRKYCQENAAYL
VKNHLRRVKLKDIAVDFIIEYQQQQIVSEIEAGLVGHILLNKDLLKELSVSVQEIHMKCQ
ETINSFRKKKKTAETFKRTDLFVSESCSIQQSCVDKWLDMPCLMFFFRNTNDDNLDSAIQ
ILADIIYPVLLQTVIKGDPRICSAKIIWVNPDATTWIRNPSKTQKGELALEVVLEKSAVK
QNGDAWRTVIDCCLPVLNIIDTHRSIPYAIKQVEQLLGISCAFEQAVQRLSTSVSMVTRG
VLKEHLMLLANSMTCCGNLIGFNSGGYKALSRSLNIQVPFTEATLFTPRKCFERAAEKCY
DDSLSSIVASCSWGKRVAVGTGSRFDLLWNQESGSDQMSGMDVYNFLHMVSGAGGSNSNT
ACLGEEVDDLMDEWCLSPDHSTGLDKPVFEDAAEFENNLDGQSASANWEKDVSLDKVSDV
GWDASGWNKNVEDVDKFAAAATSSEKQNEWSGWGVSKSNSQVVSPKVDVGWDALSGWNKN
AEDGDKFAAAATSSKKKNECSDWGASKSKSQDVVSPKVDVGWDALSAWNKNAEDGDNFAA
AASSSKKQSEWSDWGMSKSKSQDVSSKTDGTCMKEQTELSGWGMKKFDTRDVLPVEEGAS
KPNGWDSGASWGIMSKESEELDASAAAPWSGWGTKDSTPKKSLDETSKSSSWDTVSSWGK
KIAAVHESGFTGNDNQPDQGRIENEWDNKASHVKPVQSASGWNNKVTEEKVVQSTSSWDE
KASWEKPVQSMSGWVSSSVAGSDESPTKGWSKNSAWDQQKSQTMNNAWDQQKSPATNSSW
DRQKSSTANNSWDQQKPPANSSWDQEKSPTMNNSWDQQKSPECSQGWGTLNDLNQPASSS
GWDMPQGEDNTQNEKQHQWGQSKGSRRWASDANKKNRPVKPARMMNDDSSMAAMYTVTRQ
RLDMFTSEEKDILSDVEPLMQSIRKIMHQTGYNDGDPLSADDQTFVLDNVLAHHPDKAVK
MGAGIDYVMVNKHSLFLDTRCLYVVTTDGHKQDFSYLKCLENMIKGKYPDLAEAFVAKYF
RKSRGNRERGVAPENSQGNRDQSVTQDDNSQGNRDQSVAQDDNEGEVKQ
NT seq 5910 nt   +upstreamnt  +downstreamnt
atggaggaaaattcttcgtcagttattttagatggtgagatagttggtataaagttctgt
ttggcaagccctaaagaaattcttacagcatcagtcagtggctttcctattaaccatgtt
agtcaactctcgaattcctaccttggtttgcccctcgaatttggtaaatgtagtgcatgt
ggtacatcagaacctggacaatgtgaaggtcattttggatatattgaattaccaattcca
atataccatcctagccatatcagtgaattaaagcgactgttgagtttgctttgcttgaag
tgcctaaaattgaagaacaagtttcagatgaaaagtggcagtgtcgctgaaagattgcta
tcgtcctgttgtgagaatactccacaagtttcaatcaaagaggttaagacaacagatggt
gcttgttatttggagttgaagcagccatctagacaatcaaaaactaactggaatttttta
gagagatatggttttcgctatggtgatcatcatactcgaactcttctgccttgtgaggtg
gtggaaatactcaagagaattcctgcacagacaagacggaaactttctgggaaagggttc
ttcccacaagagggatatattttgcagtatttgcctgttcccccaaattgtttatctgtc
ccggacgtttcggacggcattagcgtcatgtcctcggatctttctacatcaatgctgaga
aaggttctgaagcaagttgagatcatcaaaagttcaaggtctggtaccccaaattttgaa
tcgcatgaagtagaagctaacgatttgcaatcagcagttgagcaatatcttcaagttagg
ggtactgttaaagcatcccgcagcatagatgcacgatacggggttaacaaagatgctagt
gattcgtcaacgaaagcatggctagagaaaatgagaacactgtttattagaaagggttca
gggttttcttcacgcagtgtgattactggtgatccatacaaaaaggtgaatgagattggt
attccatctgaaattgctcagagaattactttcgaggaaagggttaacatgcacaacatg
agatatttgcaaaatctggtggataacaagttgtgtttgacctacagagatggtggttct
acatattcattgagggaggggtcaaaggggcatacgtttttgagacctggtcaggtggta
cataggcgaattatggatggagatattgttttcataaataggccaccgacgacacataag
cattcattgcaggcactttcagtatatgtacatgatgatcatacagtgaagataaatccc
ctaatttgtgggccattaagtgctgattttgatggagattgtattcacttgttctatccg
cagtctttatcagcaaaagcagaggtttatgagctcttttcagtggagaagcagttgctt
agctcccatagtggcaacctaaatttgcagttggcgactgattcattgttgtcactcaga
gttatgcttaagacatttttgtttaaaaaggcagatgctcaacaattgtctatgtttctc
tcttcagctttgccagaacctgcttttttaaagggtaatcatgttgctccatgttggaca
gccttccaaattctgcagaccgcttttcctgcatgcctagattgctcctgtgatagatac
ttaattggaaaaagtgatatattgaaagttgatttcaataaggaccttatgcagtctgtc
atcaatgaagttgtggcatctattttctatgagaagggtccaaaagaggttcttaacttc
tttgattctttacaacctttattgatggagaatatttttgcagagggcttcactgtttgt
ctagaagatttttccgtctccagggaagttatagaaaatattcagaaggatattcaggtt
atatctcccctgctttatcagttaaggtcaacttataatgaattggttgagttgcaaatg
gagaatcacattcgagtagccaaagcgccaatagctgatttcatactaaaaacatcctct
ttgggtaatttaattgactctaggagtgattctgctgtcaataaggttgttcagcagatt
ggattcctgggaatgcaactttctgataaaggaaaattctactcaaagactttggttgaa
gatgtggctcaccaatttcaaagcatatatccttcagatgcaatcgattatccttctgct
gagtttggactgattaaaagttgctttttccgtgggcttgatccgtatgagggcattgta
cattcaatatctacaagagaagtaatggttcgctctactagaggattgtctgaacctggg
accttgtttaagaatttgatggccatccttcgtgatgttgttatttgttatgatggcaca
gttagaaatgtcagtagcaattcaataatacaatttcaatatgggctaagtgctagaact
agacctcaattccccgctggtgaacctgtgggtgtcttagctgctactgcaatgtcaaat
ccagcatataaagcagttcttgattcatctcctagtagcaattcttcttgggaactgatg
aaggaaatattgctttgcaaagtaagtttcaaaaatgacccaattgaccgccgtgtaatt
ctgtatttgaaagattgtgattgtgggagaaagtattgccaagaaaatgcagcatatctt
gttaagaatcatttgagaagagtcaaacttaaagatattgcagtagatttcatcattgaa
taccagcagcagcaaattgtgtcagaaatagaggcaggccttgttgggcatatccttctc
aataaggatcttttgaaggagttaagtgttagtgtgcaagagattcatatgaagtgccaa
gaaactattaactcctttcgtaagaagaaaaaaactgctgaaacttttaagaggacagat
ttgtttgtcagtgaaagttgttccattcagcaatcctgtgtggacaaatggcttgacatg
ccatgcttgatgttcttttttcgaaatacaaatgatgataatctagatagtgcgatacaa
atcctggctgacatcatctaccctgttcttctacaaacagtgatcaagggtgaccctcgt
atctgttcagcaaaaattatctgggttaaccctgatgcaacaacttggataagaaatcca
agtaagactcagaagggtgaattggctttggaagttgttttggagaaatctgctgtgaag
cagaacggtgatgcctggaggactgtcatcgattgttgtcttccagtgctaaatataatt
gacacccataggtctataccttatgccataaagcaagttgagcaactgctcggaatttct
tgtgcttttgaacaagcagtgcagcgtctctccacttctgtgtcaatggtgacaagaggt
gttctaaaggaacacctcatgctcttagctaacagcatgacatgttgtggaaatttaatt
ggcttcaactctggtggttataaggcactatctcgctcattgaatattcaagtgccattt
accgaagcaacactgtttacaccaagaaagtgctttgaaagggctgctgagaaatgctat
gacgattccttgtcgagcatagttgcatcctgttcttggggtaaacgtgtggctgttgga
acaggatcacggtttgacctcctttggaatcaggagtctggatcggatcaaatgagtgga
atggatgtgtacaactttctgcacatggttagtggtgctggtggaagcaattctaatact
gcttgcctgggagaagaagttgatgatttaatggatgagtggtgcttgtctccagaccat
agcactggtttagataagccggtgtttgaggacgcagctgaatttgagaataatttagac
ggtcagtcagctagtgcaaattgggaaaaagatgtgtctttggacaaggtgtcagatgtt
ggttgggatgcatctggatggaataaaaatgttgaggatgttgacaaatttgctgcagct
gcgaccagttcggagaagcaaaatgagtggtctggttggggtgtgagcaaatctaactca
caagttgtctctccaaaagtggatgttggttgggatgctttgtctggatggaataaaaat
gcggaggatggtgacaaatttgcagctgctgcaaccagttcgaagaagaaaaatgagtgt
tctgattggggggcgagcaaatctaaatcacaagatgttgtctctccaaaagtggatgtt
ggttgggatgccttgtctgcatggaataaaaatgcagaggatggtgacaattttgcagca
gctgcatccagttcaaagaagcaaagcgagtggtctgattgggggatgagcaaatctaaa
tcacaagatgtctcttcaaaaacggatggaacttgtatgaaagagcaaactgaattgtct
ggttgggggatgaaaaagtttgatacacgagatgtccttcctgtggaagagggagcctcc
aagcccaatggttgggattctggtgctagttggggaataatgagcaaagaatctgaagaa
cttgatgctagtgctgcagcgccatggtctggttgggggacaaaagattccacccctaaa
aaatctttggacgaaacttccaaatctagtagctgggatactgtttcttcttggggaaag
aagattgctgcagttcatgaatctggcttcactggaaatgataaccagccggaccaaggg
agaattgaaaatgaatgggataataaagcaagtcatgtaaagccggtgcagtcagcatct
ggttggaataacaaagtgacagaggaaaaggtagttcaatcgacatctagttgggatgaa
aaagcttcttgggaaaagccagttcagtcaatgtctggttgggtttcctcatctgttgca
ggctcagatgagtcacctacaaaaggctggagtaagaatagtgcttgggaccaacaaaag
tcacagacaatgaataatgcttgggaccaacaaaagtcacctgcaacaaatagttcctgg
gatcggcaaaaatcatctacggcaaataattcttgggaccagcaaaagccaccagcaaat
agttcttgggaccaagaaaagtcacctacaatgaataattcatgggaccaacaaaagtca
cctgaatgttcacagggttggggcacccttaatgacttaaaccaacctgcaagttctagt
ggctgggatatgccacagggtgaggataacactcaaaatgaaaaacagcatcagtgggga
cagagtaagggctcacgtcgttgggcttcagatgctaataagaagaatcgtcctgtgaag
ccagctcgaatgatgaatgatgattccagtatggctgcaatgtacactgttacaagacaa
agactagacatgtttacttctgaggagaaagatattctgtcggatgttgagccactcatg
caatcaatcagaaaaataatgcaccagactgggtacaacgatggggatccgctgtctgcc
gatgatcagacgtttgttcttgataatgttttagctcatcatccagacaaagctgtaaaa
atgggtgctggtattgattatgtcatggtaaacaagcacagccttttcctggataccagg
tgcctctatgttgtcacaaccgatggtcataagcaagatttctcttatctcaagtgtctg
gagaacatgatcaaggggaaatatcctgatttggctgaagcttttgttgcaaaatatttc
cgaaaatctcgagggaaccgtgagcgaggtgttgctccagagaattctcaagggaaccgc
gaccaaagtgttactcaagatgataactctcaagggaaccgtgaccaaagtgttgctcaa
gacgataatgagggggaggttaagcagtag

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