Gossypium arboreum (tree cotton): 108486186
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Entry
108486186 CDS
T05776
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gab03021
]
108486186
03036 Chromosome and associated proteins [BR:
gab03036
]
108486186
Transcription machinery [BR:
gab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
108486186
Chromosome and associated proteins [BR:
gab03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
108486186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
Tex_central_region
HHH_9
HTH_44
HHH_3
Tex_N
S1
Motif
Other DBs
NCBI-GeneID:
108486186
NCBI-ProteinID:
XP_017645568
LinkDB
All DBs
Position
6:complement(5927483..5936905)
Genome browser
AA seq
1644 aa
AA seq
DB search
MGKNVVSDEEEELELDEDGEPIEGDTLNGRDPDDDDEEEDDEGQDEYENDGFIVDDVEDE
EVDEAEEREDSDEERRKKKKKRKKKEAEDLDEDDYELLRENDVNVPKGSKKFKRLKKAQR
DLDGVRYGLSDDEFDGSMKGGATAEEKLKRTLFGDDDGQPLEDLPEDEEQIEEEEDGDMG
EEDEMADFIVEEDDVPGASVRRKKMKNKKSKHAFDVSSSALKEAQDIFGDVDELLQLRKQ
GLDYSDQKERRLEEQFEPTVLSEKYMTVKDDEIRTIDIPERMQISEESTGSPPMDEESII
EESNWMHKQLTSGAVPLFGKERTDLSINKDDIMRFLDLTHVQKLDIPFIAMYRKEQCLSL
LQDPEPHEVDDIDQEKSDKKPTIKWHKILWAIRDLDRKWLLLQKRKSGLQSHYSKRFEEE
SRRIYDETRLNLNQQLFESILKDLKDAESEREVDDVDAKFNLHFPPGEVGADEGQYKRPK
RRSQYSICYKAGLWEVASKFGYSAQQLGSQLSLEKLPVDELEDPKETPEEMASNFTCAMF
ETPQSVLKGARHMAALEISCEPSVKTYVRNIYMENAVVSTSPTPDGKIAIDSFHQFAGVK
WLREKPLSKFEDAQWLLIQKAEEEKLLQVTFKLPEKIMDDLIKECNERYLSNGVSKSAQQ
WNEQRKQILNDALFGFLLPSMEKEARSLLASGAKNWLLLEYGKDLWNKVSVGPYQKKEND
INSDEEAAPRVMACCWGPGKPATTFVMLDSSGEVLDVLYTGSLTLRSQNINDQQRKKNDQ
QRVLKFMTDHQPHVVVLGAVNLSCTRLKDDIYEIIFKMVEENPRDVGHEMDELSIVYGDE
SLPRLYENSRISADQLPGTSGIVKRAVALGRYLQNPLAMVATLCGPEKEILSWKLNPMEN
FLTADEKYSIIEQVLVDVASQVGLDVNLAASHEWLFAPLQFISGIGSRKAASLQRSLVRV
GTIFSRKDFLQAHGLGKKVFVNAVAFLRVRRSGLAANSSQFIDLLDDTRIHPESYLVAQE
LAKDVYYEDFKGENDDDDALEMAIEHVRDRPSLLKSLRLDNYLESKKRVSKRETFVDIRR
ELIQGFQDWRKPYKEPSQDEEFYMISGETEDTLAEGRVVQATVRRVQGGRAICALESGLT
GMIMKEDYADDSRDIVELSDRLHEGDILTCKIKSIQKNRYQVFLVCKDSEMRSRHQHVQN
LDPYYHEERSSIQSDQEKARKEREMAKKHFKPRMIVHPRFQNITADEAIEYLSDKDPGES
IIRPSSRGPSFLTLTLKVYNGVYAHKDIVEGGKEHKDITSLLRIGKTLKIGEDTFEDLDE
VMDRYVDPLVSHLKAMLSYRKFRKGTKVEVDELLKIEKSEYPMRIVYCFGISHEHPGTFI
LTYIRTSNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQKHIDDPQHESAPSIRSVAAMV
PMRSPGADGSSGGSMGGWKGHSYDRGQSSTPGSRTGRGRDGHQSGAPRGGRGRGRGGSYN
SNRGRNNGQDSSYDDTPKWDSGSSKKGDDGGWGSFPGAKVQNSPGTDAFPGGWGASGTES
GGGSGSGWGASGTESGNGNGSGSGWGGSGGGSGWGASGTESGGGNGSGSGWGGGSGGWDQ
ASGGTDNGGSGWGSAPKSSNSGGW
NT seq
4935 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaaacgtggtatctgacgaagaagaggagttggaactcgacgaagatggagag
cccattgagggagacacactcaatggccgcgaccctgacgacgacgacgaagaagaagac
gatgaggggcaagatgaatatgagaatgatggattcatagttgatgatgtggaggatgaa
gaggtagatgaagctgaagagagggaagatagcgatgaggagaggcggaaaaaaaagaaa
aaaagaaagaagaaggaagctgaggatcttgatgaagatgactatgagctcctccgggag
aatgacgttaatgtaccaaagggtagcaagaaatttaagcggctaaaaaaggctcaaagg
gatttagatggggtacgatatgggctctctgatgatgagtttgatggtagcatgaagggt
ggagcaactgctgaggaaaagcttaagcgtaccttatttggcgatgatgatgggcaacct
cttgaagatcttcctgaagatgaagaacaaatagaagaggaagaggatggagatatgggt
gaagaagacgaaatggcagactttattgtagaagaagatgatgtgcctggggcttctgtt
agacggaagaagatgaagaataagaaatcaaagcatgcatttgatgtttcgtcatctgct
ttaaaggaagctcaagatatatttggtgatgttgatgaactcctgcagctacgcaaacag
ggattagattatagtgatcagaaagaaaggagacttgaagaacaattcgaacccactgtt
ctttctgaaaagtatatgacggtaaaggatgatgaaattcggacgattgatattccagaa
agaatgcagatttctgaggaaagcactggcagtcctccaatggatgaagagagcataata
gaagagagcaactggatgcataaacagcttactagtggtgcagtaccgctatttggtaaa
gaaaggacggatctttctataaacaaggatgacatcatgaggtttttggacctaacacat
gtccagaaattagatattccctttattgctatgtatcgcaaggagcagtgcctaagtctg
ctgcaagatcctgagccacatgaggttgatgatattgatcaggaaaaatctgataaaaag
cctacaataaagtggcacaagatactttgggcaattcgggatctggaccggaaatggctg
cttcttcaaaagaggaagagtggccttcagtcacattatagtaagcgatttgaagaagaa
tctcgtcggatatatgatgagacaagacttaacttgaaccaacaactttttgagtcaatt
cttaaagatctcaaggatgcagaatcagaaagggaagttgatgatgttgatgccaagttt
aacttgcatttcccaccaggtgaggttggtgcagatgaaggtcaatataagaggccaaag
aggagatcacaatatagtatttgctataaggctggtctctgggaggttgcaagcaagttt
ggatacagtgctcagcaacttggatctcagctatctcttgaaaagttgcctgttgatgag
ttggaagatcctaaggagacaccagaagagatggcttcaaactttacatgtgcaatgttt
gagactccacaatccgtcctcaaaggagccagacatatggcggcgcttgagataagttgt
gagccatctgtcaagacatatgttcgtaatatctatatggagaatgctgtagtatcaacc
agtccaacacctgatggaaaaatagccatagattctttccatcagtttgctggtgttaag
tggctgcgggaaaaaccattgagcaaatttgaggatgcacagtggcttctaatccagaag
gctgaagaggagaagcttcttcaagtaacttttaagctgccagaaaaaattatggatgac
ttgattaaagaatgtaacgaaagatatctcagtaatggcgtcagtaaatctgctcaacaa
tggaatgaacagagaaagcagatactgaatgatgctctttttggtttccttttgccatcg
atggagaaagaagcaagatccttgttggctagtggagctaagaactggttacttttggaa
tatggcaaggatttgtggaataaagtttccgtggggccttatcaaaagaaggaaaatgat
attaattctgacgaggaagctgcaccacgtgtcatggcatgctgttggggccctgggaag
cctgcaactacttttgtgatgttagattcatcaggagaggtgcttgatgtgctttacact
ggttctcttacattacggtctcaaaatattaatgaccagcaacgcaagaaaaatgatcag
cagcgtgttttgaagtttatgactgatcatcaaccacatgttgttgttcttggagctgtg
aatttgtcttgtacccgcttgaaagatgatatttatgagattatttttaagatggtggag
gaaaatcctagagatgttgggcatgaaatggatgagctgagcattgtatatggggatgag
tctctaccccgtctctatgaaaattctcggatttcagcggatcagttacctggcacatca
ggcattgttaagcgggctgttgctcttgggcgttatcttcaaaatccactggcaatggtt
gcaactctgtgtggccctgagaaggaaatattgtcttggaagcttaatcccatggagaac
tttctaacagcagatgagaagtatagcataattgaacaggttttggttgatgttgcaagc
caggttggccttgatgttaatttggctgcaagccatgaatggttgtttgctcctttgcaa
ttcatttctggtattgggagtagaaaggcagcatcactgcagaggtcattagtaagagtt
ggaacaattttcagtcgaaaagactttttgcaagcccatggacttgggaagaaggttttt
gtcaatgcggtagcctttctacgtgtccgtcggagtgggcttgctgccaatagcagccag
ttcattgatttgttggatgacactagaatacatccagaatcttatcttgttgcccaggaa
ttggccaaagatgtttattatgaggattttaaaggtgaaaatgatgatgatgatgcattg
gaaatggcaatagaacatgttagggaccgaccaagtttattaaaaagccttcgtcttgat
aactatctagaaagcaagaagcgcgtgagtaagagggagacctttgttgatataagaagg
gaattaattcagggctttcaggattggcggaaaccatataaagaaccaagtcaagatgag
gagttctacatgatttcgggtgaaactgaggataccctggcagaaggccgggttgtgcaa
gcaacagttcgcagagtgcaaggtggacgggctatttgtgctcttgaatctggattgact
gggatgattatgaaagaagactatgcagatgactcgagagatattgttgagttgtctgat
aggctgcatgaaggtgacatcctgacctgcaagatcaaatcaattcaaaagaataggtat
caggtgttcctggtttgtaaagacagtgagatgagaagccgacaccagcatgtccagaac
cttgacccttactaccatgaggagcgaagcagcatacagagtgaccaagagaaagctcgt
aaagagagggaaatggccaagaaacattttaagccgaggatgattgtccatccacgcttc
caaaatattactgccgatgaagctattgagtatttatctgataaggatcctggagaaagc
atcatccgtcccagttctcgtgggccttcttttctaaccttaactctcaaagtttataat
ggagtttatgctcacaaggatatagttgaaggtggaaaagaacacaaggacattaccagc
ctgctccgcattgggaagacattgaaaattggggaagacacttttgaggatttggatgag
gtaatggatcgatatgttgacccccttgtgtctcatctgaaggcaatgctgagttatcgc
aagttcaggaagggaactaaagtagaggttgatgagcttctaaagattgagaaatcagag
tatcctatgagaatagtgtattgctttggcatttctcatgaacatcctggcacttttatt
cttacttatatacggacttcgaatccacatcacgagtatattggcttatatcctaaggga
ttcaagttccgaaaaaggatgttcgaggacattgatcgtctggttgcttatttccagaag
catattgacgatccacagcatgagtcagctccatcaattagatcagttgcggcaatggta
ccaatgcggagccctggtgctgatggctcttctgggggatctatgggtggttggaaaggg
cattcttatgacaggggtcaatcttccactccaggttctagaacaggtcgtggccgagat
gggcatcaaagtggtgctccacgtggtggtcgtggacgtggtaggggtggctcgtataac
agcaaccgggggcgtaacaatgggcaagattcatcttatgatgatacccccaaatgggat
tcaggtagcagcaagaaaggggatgatggtggttggggcagtttcccaggagctaaagtt
caaaactctccaggtacagacgctttccctggtggttggggtgcttctggaactgaaagt
ggaggtggcagcggcagtggctggggtgcttctggaactgaaagtggaaatggcaatggc
agcggcagtggctggggtggcagtggcggtggcagtggttggggtgcttctggaactgaa
agtggaggtggcaatggcagcggcagtggttggggtggcggtagtggaggttgggaccaa
gcaagtggtggtactgacaatgggggttctggatggggatctgctcccaagagcagtaat
tctggtggttggtga
DBGET
integrated database retrieval system
