Gossypium arboreum (tree cotton): 108486372
Help
Entry
108486372 CDS
T05776
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108486372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gab03400
]
108486372
DNA repair and recombination proteins [BR:
gab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
108486372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
SAWADEE
Motif
Other DBs
NCBI-GeneID:
108486372
NCBI-ProteinID:
XP_017645892
UniProt:
A0A0B0NS67
LinkDB
All DBs
Position
6:complement(9207060..9213981)
Genome browser
AA seq
1268 aa
AA seq
DB search
MRKRHLYHSEHPFDEYPFEVFVQDSWQAVELIRIKNGFMTLHLIDGQYLIEKKPFSDLRV
KSRKATLPDCTCFLRPGIDICILSRPQETESLDEETPEPVWVDAKISSIERKPHDSECSC
QFYINLYDNRAPLGSEKGTLSKETEVIGINDICILQKLEKNACEDQHYRWNFSEDCSTLK
RTKIFLGKFSSDISWLLVTSVLKQIAFDVRSVQNKIVYQILDQDDDTPLKYNNYFHAVNI
KSENGISVSNVVQFDPLGNNETDAVYSVDETNQWPVYDAMNLRRSKRRFVQPERFVGCDH
PGGTDTSWHLTAACRTSNWREEGEEQEADMNMPLSHLLCINASPTEELTLSEKRDTMSKS
KNVSKEVKSDVTTPRKPSVGNPSRSGVKYPRRPSVKNPRKDENTLAIVPVSSETGDPAFG
NCHMQRTPTNLSEEIEQLSLHYYNMKRYTANKKKKIPALEYLDYGTGWKGRPQPTKAQSK
SYRSSQTRMEDFDELKTYKKTTLSAGAYNKLINSYMKNIDSTSVKDESHIIDRWNQFKEA
TSTEMNRKTEPEEPPVEEEEEMSETEMLWREMEICMASSYFDDDEARVSAESLRKANENC
QHEFKLDDEVGVLCRICGFVSTEIKHVSAPFLEHKTWVADGNSCYRDETENKADGEEGLN
LFCDYTTIQARLSEESDNVWALIPELRKKLHFHQKRAFEFLWLNIAGSLIPALMEPSSKK
TGGCVVSHSPGSGKTFLIIAFLASYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPVPVH
LIHGRRSYRVFKKNAVKFHGVPRPSQDVMHVLDCLDKIQKWHAQPSVLVMGYTSFLTLMR
EDSKFEHRKFMAKVLRESPGLLVLDEGHNPRSTKSRLRKVLMKVETDLRILLSGTLFQNN
FCEYFNTLCLARPKFVFEVLRRLDPKYKRKKRFDKARNLLENRARKLFLDKIARKIDASV
GEERMEGLNMLRKITNGFIDVYEGGNFDCLPGLQIYTLMMNSTDIQHEILVKLHKIMSTY
TGYPLELELLITLASIHPSLVRTSNCSAKFFSTEELLELEKIKFDFRKGSKVMFVLNLVY
RIIKNEKVLIFCHNIAPIYLLAEMFERIFRWRKGREILVLTGDLELFERGRVMDKFEEPG
GASRVLLASITACAEGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLA
TGTLEEDKYRRTTWKEWVSSMIFSEAFVEDPSQWQAEKIEDDVLREIVAEDKVKSFHMIM
KNEKASTG
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaaaggcatttatatcattccgagcatccgtttgatgaatatcctttcgaggtc
ttcgtccaagactcatggcaagctgtggaactcataagaataaagaatggattcatgact
ttgcatctgatagatggtcaatatctgattgagaagaaacccttctctgatttacgtgtt
aagtctcggaaggcaactttgcccgattgcacttgctttttgaggcctggtattgatata
tgcatcctttctcgccctcaggagacagaaagtctcgatgaagagactccggagcctgtg
tgggttgatgctaaaataagttccattgagaggaagcctcatgactctgaatgctcgtgc
cagttttacataaacttgtatgataaccgtgctcctctcggttctgagaaaggaactctt
agcaaagagactgaagtaataggaatcaatgatatttgtatcctccaaaagcttgaaaag
aatgcatgtgaggatcagcactataggtggaatttctcggaggactgctcgacattgaaa
cgaactaagatatttttggggaaattctcatctgatatatcatggctgcttgttacatct
gttttgaagcagattgcattcgatgtgagatcggtgcagaacaagattgtctatcaaatt
ctggatcaagatgatgacactcccttaaaatataataattatttccatgctgtaaatatc
aaatctgagaatggtatttcggtatccaatgtggtccaatttgacccccttggaaataat
gaaactgatgcagtttatagtgttgatgaaaccaatcaatggccagtttatgatgctatg
aacttgcgacgctctaaacgcaggtttgtacaacctgagcgttttgttggttgtgatcat
cctggagggacagatactagctggcatcttacagctgcttgtagaactagcaactggaga
gaagagggagaggaacaagaagccgatatgaacatgccgctatcacacttgttatgcatc
aatgcaagtccaacggaagagcttaccctgtctgaaaaaagagataccatgtccaaaagt
aagaatgtatcaaaggaggtaaaatcagatgtgacgactccgaggaaaccaagtgtggga
aatccgagcagatcaggtgtgaaatatcccaggagaccaagtgtgaaaaatccaaggaaa
gatgaaaatactcttgctattgttcctgtgtcttcagaaacaggtgatccagcctttgga
aactgtcatatgcagagaactccaacgaatttatcagaagagattgaacaactctctttg
cattattataatatgaaacgctacactgcgaacaagaagaagaaaattcctgctttagag
tatctagattatggaactgggtggaagggaagacctcaaccaacgaaagcacagagtaaa
agttataggtcttctcaaacacgaatggaagattttgatgaactgaaaacttacaaaaag
acaactctgagtgcaggtgcatacaataaacttataaattcatatatgaagaacatcgat
tctacatcggtaaaagatgagtcacacatcattgaccggtggaatcagtttaaagaagca
acgtccacagaaatgaataggaaaacagaaccagaagaaccaccagttgaggaggaggaa
gaaatgtctgaaactgaaatgctgtggagagaaatggaaatatgtatggcatcatcatac
tttgatgacgatgaggctagagtatccgctgagtctctccggaaagctaatgaaaattgt
cagcatgaattcaaattggatgatgaagtcggggttctatgtcgtatctgtggctttgtt
agcactgaaataaaacatgtttctgcaccattcctggaacataaaacctgggtagcagat
ggtaattcgtgctacagagatgagacagagaataaagcagacggagaagagggcctgaat
cttttctgtgattacactactatacaggcacgattatctgaagaaagtgacaatgtatgg
gcactaatccctgaacttaggaagaagttacatttccaccagaaacgggcctttgaattc
ctatggctaaatatcgcgggttctttgatacctgcactaatggaaccatcatcgaaaaaa
acaggtggttgtgtagtttctcattcaccgggatctgggaaaacttttctcattattgca
tttcttgctagctacttgaagttattcccaggaaagcggcctttggtccttgctccaaag
acaactctatatacttggtacaaggaatttatcaagtgggaaatccctgtgcccgttcat
ttaattcatggccgtagaagttatagagtcttcaagaagaatgcagtgaagtttcatgga
gttccgagacctagtcaagatgttatgcacgttttggattgtctagataaaatacaaaag
tggcatgctcaaccaagtgttcttgtcatgggctacacttcgttcttgacgttaatgcga
gaagattcgaagtttgagcacagaaaatttatggctaaggttctgcgtgaaagtccgggg
ctcctggtattggacgaagggcacaaccctcgaagtactaaatcgagattgagaaaggtt
ttgatgaaagttgagacagatctgaggatattgctttcaggtacattgtttcagaacaac
ttctgtgaatattttaacaccctgtgccttgcaagaccgaaattcgtgtttgaagttttg
cggcgattagaccctaaatacaagagaaagaagaggttcgacaaagctcgcaatttgtta
gaaaaccgagcaagaaaactcttcctagacaaaattgccaggaagatcgatgctagcgtc
ggagaagagaggatggaaggtcttaacatgttgaggaaaatcaccaacgggtttattgac
gtgtacgaaggtgggaattttgactgcctccctggtttacaaatttacaccttaatgatg
aactcaacagacatacaacatgagattttggtaaaactccacaaaataatgtctacatat
actggctatccattggaattggagcttttgataacgctagcatcgatacatcctagtttg
gtccggacttcaaactgtagtgctaaatttttcagtacagaagagttgctggaacttgag
aagatcaaattcgattttagaaaaggttccaaggtgatgtttgttttgaaccttgtttat
cgaatcatcaagaatgaaaaggttctcatcttctgccacaatattgcccccatttatttg
cttgcggaaatgtttgagagaatcttccgatggcgaaagggtagagaaatattggtcctt
acaggagacttggagctattcgagagaggaagagtgatggacaagtttgaggaaccaggt
ggtgcttcaagggtacttctcgcttcaattactgcatgtgctgaaggcattagtttgaca
gctgcatcccgggtgattttgttggattcggaatggaacccttccaagacaaagcaggct
attgcacgggctttccggcctggtcagcaaaaggttgtttatgtgtatcagctgttggca
actggcacgctcgaagaggacaagtatcgtaggaccacatggaaagaatgggtatccagt
atgatttttagcgaagcattcgtggaagatccgtctcagtggcaagcagaaaagatcgaa
gatgatgtattgagagagatagttgcagaggacaaagttaagtcatttcatatgataatg
aaaaacgaaaaggcttctacaggttga
DBGET
integrated database retrieval system
