KEGG   Gossypium arboreum (tree cotton): 108486566
Entry
108486566         CDS       T05776                                 
Name
(RefSeq) uncharacterized protein LOC108486566
  KO
K24755  WD repeat-containing protein 76
Organism
gab  Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:gab00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:gab04121]
    108486566
   03036 Chromosome and associated proteins [BR:gab03036]
    108486566
   03400 DNA repair and recombination proteins [BR:gab03400]
    108486566
Ubiquitin system [BR:gab04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     108486566
Chromosome and associated proteins [BR:gab03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    108486566
DNA repair and recombination proteins [BR:gab03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Other MMR factors
     108486566
  DSBR (double strand breaks repair)
   Other DSBR factors
    Others
     108486566
SSDB
Motif
Pfam: WD40_Prp19 WD40_CDC20-Fz WDR55 WD40_WDHD1_1st WD40 Beta-prop_EIPR1 Beta-prop_EML_2 EIF3I Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_RFWD3 Beta-prop_EML Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_CAF1B_HIR1 Beta-prop_DCAF4 Beta-prop_WDR19_1st NBCH_WD40
Other DBs
NCBI-GeneID: 108486566
NCBI-ProteinID: XP_017646173
LinkDB
Position
6:complement(104412908..104416638)
AA seq 525 aa
MASQKLTEYERQRLENIKRNAEMVAALKLHSKAATLSAATAKRHRTKTYKTSPEKKPKTE
TPIVIRRSLRTRGMPPDSKGLPDDFSDNFDKTPKSVSVIKPQSPRVLGPISMVDAFSGDD
ETESNKMLVGTILSIAKETQVGVSVKDVKDEIFSEKGALGSCKSEGFESLGTEKVDESLS
GKRKLVKGVVKNEYLDSLVKIEKSDQWLESLDLKPENVARLLPGRIMVVKFFPCSSVRMI
AAGNKFGNIAFWNVDSNNEKEDGIYLYRPHTGPISGILIHQHSMSKIYSSCYDGFIRLMD
AEKEVFDLVHSCDDTIFSLSQQPNNSETLYFAEGRGGLKVWDIRTGKSSKNWMLHEDRIN
TINFNSQNPNIMATSSTDGTACIWDLRSMSGHKLKTLKTVSHSRAVHSAYFSPSGSSLAT
TSLDNKVGIISGVNFEDACMIYHDNWTGRWLSSFRGIWGWDDSYIFIGNMKRGVDVISPS
QKRSVMTLQSPEMSAIPCRFDAHPYEIGMLAGATSGGQVYLWTPC
NT seq 1578 nt   +upstreamnt  +downstreamnt
atggcgtctcagaaactaacagagtatgaacgtcaaaggctcgaaaacataaagagaaac
gccgaaatggtggccgcactcaagctccactcaaaagcagccactctttcagccgccacc
gccaaacgccacaggacgaaaacgtataaaacgagtccagagaaaaaacccaagacggaa
acccctatcgtaattcgacggtcgttgaggacgagaggtatgccgccggattcaaaaggt
ttgcctgatgacttttctgacaatttcgataaaaccccaaaatccgttagcgttataaag
ccgcaatcgcctcgtgttttgggtcctattagtatggtagatgcttttagtggagatgat
gaaacggagtctaacaaaatgctggttgggacaattttgagtattgcaaaggagacccaa
gttggtgtttcggttaaggatgttaaagatgagatttttagtgagaaaggagctttgggt
tcttgcaaaagtgagggttttgaatcactaggtacagaaaaggttgatgagagtttgagt
ggaaaaaggaagttggtcaagggtgtggttaaaaatgagtatttggatagtttagttaag
attgagaagagtgatcaatggctggaatcgttggatttgaaaccggaaaatgtagcacgg
cttttgcctggaaggattatggtggttaagtttttcccttgcagtagtgtgaggatgatt
gcagctgggaacaaatttgggaatattgcattttggaatgtggattctaacaatgaaaag
gaagatggcatatatctttatcgcccgcatactggccccatttctgggattttgattcat
caacattcgatgtcaaagatttatagcagctgctatgatggctttattcgattaatggat
gctgagaaggaagtttttgatctggtgcattcttgtgatgataccatattttccctctct
caacagcctaataattcggagaccttatatttcgctgagggtcgtggaggattgaaggtt
tgggatattcggactgggaagtccagtaaaaactggatgcttcatgaagataggatcaac
accataaacttcaactcgcaaaatcccaacataatggcaaccagttcaacggatggaact
gcttgcatttgggatttaaggagtatgagcggccataaactgaaaaccttaaagactgtg
agccatagtagggctgttcattccgcttacttctctccctctggaagctctcttgcgacc
acaagtttggacaacaaggtgggtataataagtggagttaattttgaggacgcttgtatg
atataccatgataattggactgggaggtggctttccagtttcagaggtatatgggggtgg
gatgattcatacatcttcattggcaacatgaaaagaggtgttgatgtaatctctccatca
caaaagagaagtgttatgactttgcagagtccagaaatgtctgcaattccatgcagattt
gatgcgcacccatatgaaattgggatgttagcaggagccaccagtgggggtcaagtttat
ctatggacaccatgttaa

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