Gossypium arboreum (tree cotton): 108486679
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Entry
108486679 CDS
T05776
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03013
Nucleocytoplasmic transport
gab03015
mRNA surveillance pathway
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108486679
09122 Translation
03013 Nucleocytoplasmic transport
108486679
03015 mRNA surveillance pathway
108486679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108486679
03041 Spliceosome [BR:
gab03041
]
108486679
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108486679
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108486679
Spliceosome [BR:
gab03041
]
Complex C
Other components
EJC/TREX
108486679
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108486679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
108486679
NCBI-ProteinID:
XP_017646343
LinkDB
All DBs
Position
6:complement(103163588..103168402)
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AA seq
428 aa
AA seq
DB search
MGETRDNDAYEEELLDYEEEEEKVPDSVTAKVNGEAGKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIEPTPGQVIALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNVKVHKDLLKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacgagggacaacgatgcttacgaggaagagcttctcgactacgaggaagaa
gaagagaaagtacctgactccgtgactgctaaagtcaacggcgaggccgggaagaagggc
tatgttgggattcacagttcaggattcagagacttccttttgaagccagagcttcttcgg
gcaattgttgactctgggtttgagcacccttccgaagtgcaacatgaatgtattccccaa
gctatactgggtatggatgtcatttgccaagctaaatcagggatgggaaagactgcggtt
tttgttttgtcatcattacagcagattgagccaactccaggacaagttattgccctcgtt
ttatgccatacaagagagttagcttatcagatttgtcatgagtttgagaggttcagtact
tacctgcctgatattaaggttgctgtcttctatggtggtgtcaacgtcaaagtacacaaa
gatctgctgaaaaatgaatgcccccacattgttgttgggacacctggaaggatattggct
ctggctagagacaaggacctttcattgaagaatgtcaggcatttcattcttgatgaatgt
gacaagatgcttgaatcactcgacatgaggagagatgtgcaggaaattttcaagatgacc
ccccatgataagcaagttatgatgttttctgctacgctcagcaaagaaattcgcccggtt
tgcaagaaatttatgcaagatccaatggaaatttatgtggacgacgaggccaagttgacc
cttcatggtcttgtgcagcactacatcaaattgagtgagctggagaaaaaccgcaagttg
aatgacctccttgatgcattggacttcaaccaagttgttatctttgtcaaaagtgtgaac
cgagctgctgagttaaacaagttacttgtagagtgtaattttccttctatatgcatccac
tctggcatgtcccaggaggaaaggctgactcggtacaagggtttcaaggaggggcataaa
agaattctagtggccacagatttggttggaaggggaattgacattgaacgtgttaacatt
gtcatcaactacgatatgccagattctgctgatacatacctgcacagagttggtagggct
ggtaggtttggtaccaagggtcttgcaattacatttgtttcatctgcttcagattctgat
gtgctcaatcaggtccaggagaggtttgaggtggatataaaggagcttcctgagcagatt
gatacatctacatacatgccatcataa
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