Gossypium arboreum (tree cotton): 108486894
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Entry
108486894 CDS
T05776
Name
(RefSeq) probable pectate lyase 1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab00040
Pentose and glucuronate interconversions
gab01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108486894
Enzymes [BR:
gab01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108486894
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Methyltransf_9
KxYKxGKxW_sig
Motif
Other DBs
NCBI-GeneID:
108486894
NCBI-ProteinID:
XP_017646537
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All DBs
Position
10:55775004..55778957
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AA seq
447 aa
AA seq
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MAVSKKWFLASLAVLFLFLVGAMATVQTNNDSSTVEIEKLQNSKNSTMATRSEEVKALNE
HAVADPEAVAAEVETIIDMNIRNATERRKLGFFSCGTGNPIDDCWRCDPNWQKNRKRLAD
CGIGFGRNAIGGRDGRFYVVTDSNDDDPVNPKPGTLRHAVIQEQPLWIVFKRDMVIKLKQ
ELLVNSFKTIDGRGVNVHIANGACITIQYVTNVIVHGLHIHDCKPTGNAMVRSSPTHFGW
RTMADGDAISIFGSSHVWVDHNSLSNCADGLVDAVMGSTAITISNNHLTHHNEVMLLGHS
DSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ
GNRYAAPRNPFAKEVTKRVDTAESHWKSWNWRSEGDLLLNGAYFTPSGAGASASYARASS
LGAKSSSMVGSMTSNAGALPCRRGRQC
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttccaagaaatggtttttagcttctttagctgttctgtttttgtttcttgtt
ggagcaatggccactgtacagaccaacaacgattccagcactgtggagatagagaagctg
cagaactcaaaaaactcaacaatggcaactaggtcagaagaggttaaggccttgaatgaa
catgctgtggctgatccagaggccgtagcagccgaggttgagaccatcattgacatgaat
attcgaaatgcgacggaaaggaggaagttgggtttcttctcgtgcggaactggtaatccc
attgatgattgctggcgttgtgaccccaactggcagaagaaccggaagagacttgctgac
tgtggcattggttttggaaggaatgcaattggggggcgtgatggacgcttctacgttgtc
actgactctaatgatgatgaccctgttaaccccaaacctgggaccttgcgccatgctgtg
atccaggaacaaccactttggattgtgttcaagagggacatggttattaagttgaagcag
gagttgctggtcaacagctttaagaccattgatggtcgtggggtgaatgtccatattgct
aatggggcatgtatcacaattcaatacgttaccaatgtcattgttcatggtcttcatatt
catgactgtaagcccactggcaatgccatggttagaagctcacccactcacttcgggtgg
aggacaatggctgatggtgatgcaatctccatctttgggtcaagccacgtttgggttgat
cacaattctctttctaattgtgctgatggtcttgttgatgctgtcatggggtcaactgcc
attaccatctccaacaatcacctcacccaccacaatgaggtgatgttgctgggtcacagt
gactcttacacaagggacaagcagatgcaagtgaccattgcctacaaccatttcggagag
ggacttatccagagaatgccaaggtgtaggcatgggtatttccatgtggtaaacaatgac
tacactcattgggaaatgtatgctattgggggaagtgcaaatcctaccataaacagccag
ggtaacagatacgcagctccaagaaacccgtttgcaaaggaggtgaccaagagagtggac
acagctgaaagccactggaagagctggaactggaggtcggaaggagatttgctgctgaat
ggcgcatatttcactccatctggagccggagcctcagcaagctatgccagggcctcaagc
ttgggagccaagtcctcctccatggttggatccatgacttccaatgctggagctctaccc
tgccgaagaggcaggcaatgctag
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