Gossypium arboreum (tree cotton): 108486980
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Entry
108486980 CDS
T05776
Name
(RefSeq) chaperonin CPN60-2, mitochondrial-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108486980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108486980
03110 Chaperones and folding catalysts [BR:
gab03110
]
108486980
03029 Mitochondrial biogenesis [BR:
gab03029
]
108486980
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gab04147
]
108486980
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
108486980
Messenger RNA biogenesis [BR:
gab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
108486980
Chaperones and folding catalysts [BR:
gab03110
]
Heat shock proteins
HSP60 / Chaperonin
108486980
Mitochondrial biogenesis [BR:
gab03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
108486980
Exosome [BR:
gab04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108486980
Exosomal proteins of other body fluids (saliva and urine)
108486980
Exosomal proteins of breast cancer cells
108486980
Exosomal proteins of colorectal cancer cells
108486980
Exosomal proteins of bladder cancer cells
108486980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
ChlI
Motif
Other DBs
NCBI-GeneID:
108486980
NCBI-ProteinID:
XP_017646642
LinkDB
All DBs
Position
11:16198888..16203732
Genome browser
AA seq
575 aa
AA seq
DB search
MYRHLTSLASKARLAKNRIQLNGTRLSWSRNYAAKDIKFGVEARALMLSGVQELADAVKV
TMGPKGRNVVLEQSFGAPKVTKDGVTVAKSIEFKDRVKNIGASLVKQVANATNDVAGDGT
TCATVLTRAIFVEGCKSVAAGMNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGT
ISANGEREIGELIAKAMEKVGKEGVITIADGKTLYNELEVVEGMKLDRGYISPYFITNQK
NQKCELENPLILIHEKKISNLPALVKFLELSLTKQRPLLIVAEDLESEALATLILNKLRA
GIKVCAIKAPGFGENRKAGLQDLAALTGGQVITEELGLDIEKVGAEVLGSCKKVTVSKDD
TIILDGAGDKASIEERCDQIRSAIGSSTSDYDKDKLQERLAKLSGGVAVLKIGGASETEV
SEKKDRVTDALNATKAAVEEGIVPGGGAALLYASKELENLETANFDQKIGVQIIQNALKM
PVHAIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAA
SVSSLMTTTEAIVTELPKDDKEGAATAGGMGGLDY
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgtaccgccatctcacttccctcgcctccaaagccaggttggctaagaacagaatccaa
ttgaatggtactagattgagttggagtagaaactatgcggctaaagacatcaaatttggt
gtagaagcgcgagcattgatgcttagcggcgttcaagagctagccgatgctgttaaagtc
accatgggtccaaaagggcgtaatgttgttttggaacaaagtttcggggctcctaaggtg
acaaaagatggtgttactgtagccaagagcattgaatttaaagacagagtgaaaaacatt
ggtgcttcccttgtaaagcaggttgccaatgccaccaatgacgttgctggggatggcacc
acttgtgcgacagtccttacccgcgcaatatttgttgaaggatgtaaatcagtggcggct
ggaatgaatgccatggacctcagacgaggaatcacaatggcagttgatgcagttgtgacc
aacttgaagagtagagcgcggatgatcagcacgtccgaggaaattgcacaggttggaaca
atatctgcgaatggagaaagggagattggcgagctcattgccaaggccatggagaaagtt
ggcaaagaaggtgttattaccattgctgatgggaaaaccttgtacaatgaattagaggtt
gttgagggaatgaagcttgatagaggctacatatccccttactttatcaccaaccagaag
aaccagaaatgcgaattggagaacccacttattttgatccatgagaaaaagatctctaac
ttgcctgctttggtgaaatttttggaattgtctttgacgaagcaaaggcctttactaatt
gttgctgaagatcttgaaagtgaagctcttgcaactctcattctgaacaagcttcgtgct
ggaatcaaggtgtgtgccattaaggccccaggttttggggaaaataggaaagctggcttg
caggaccttgctgctcttactgggggccaggtaataactgaagaacttggtcttgacatt
gagaaagttggagcagaagtgcttggctcttgcaaaaaggttacagtatcaaaggatgac
acaattatccttgatggcgctggagacaaggctagcattgaagaaagatgcgatcaaata
agatcagcaattggatcaagcacttctgattacgataaggacaaattacaagagaggctt
gcaaagctctctggcggcgttgcagttttgaagattggaggagcaagtgaaacagaagtt
agtgaaaagaaggatagagttaccgatgccctaaatgccacgaaagctgctgtggaggaa
ggaattgttcctggtggtggtgctgcacttctttatgcctctaaggaacttgaaaacctg
gagactgcaaactttgatcagaagatcggtgttcagatcatccaaaatgctcttaagatg
cctgtacatgcaattgcatctaatgctggagttgagggtgcagtggttgttggaaagcta
ctggagcaggacaatcccgacctcggttatgatgctgctaagggtgagtatgtagatatg
gttaaagctggaattatcgatcctttgaaagtcataagaacagccttggtagatgctgca
agtgtgagttcattgatgactacaactgaagccattgttactgaacttccaaaggatgac
aaggaaggggcagccaccgcaggcggcatgggtggtctagattactaa
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