Gossypium arboreum (tree cotton): 108487114
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Entry
108487114 CDS
T05776
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gab03041
]
108487114
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108487114
Spliceosome [BR:
gab03041
]
Complex C
Other components
Complex C specific factors
108487114
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_30
AAA_19
AAA_7
Cas3-like_C_2
T2SSE
AAA_11
ResIII
nSTAND3
TrwB_AAD_bind
AAA_29
Motif
Other DBs
NCBI-GeneID:
108487114
NCBI-ProteinID:
XP_017646844
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All DBs
Position
10:2694557..2701711
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AA seq
697 aa
AA seq
DB search
MAQFWKPGTEKPRLLEDEDGGVIFLSSSYSSSSSGYGYVSIEKQRQRLPVYKYRTAILYL
VESHATTIVVGETGSGKTTQIPQFLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGV
KLGEEVGYTIRFEDISSPDLTRIKFLTDGVLLREMMDDPLLTKYSVVMVDEAHERSISTD
IVLGLLKKIQKRRPELRLIISSATIEAKSMSNFFLSSKRRQALEGEELRPRLEPAILSVE
GRGFNVQIHYVEDPVRDYVQAAVSTVLLINDKEPPGDILVFLTGQDDIDAAIKLLTEEAR
SNGKNSSGLIILPLYSGLTRAEQDLIFSPTPKGKRKVVISTNIAETSLTLEGIVYVVDSG
FSKQRFYNPISDIENLVVAPISKASARQRAGRAGRLRPGKCYRLYTEEYFLNEMSIQGIP
EIQRSNLVSCVIQLKALGIDNILGFDWPASPSPESMIRALEVLYSLGVLDDDAKLTSPVG
FQVAEIPLEPMIAKIILSSNELGCSDEIITIAAVLSIQSIWFSARGAQKELDEAKLRFAA
AEGDHVTFLNIYKGFLQSGKSSKWCHKNFINYHAMKKVMEIRELLRRIVLRLGIVLKSCE
TDMQLVRKAVTAGFFANACRLEAYSHGGMYKTIRGSQEVYIHPSSVLFRVNPKCVIYHSL
VSTDRQYMRNVMSIDPSWLTEVAPHFYQQQRHNPTIH
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagttctggaaaccgggaaccgagaagccccgcctcctcgaggacgaggatggc
ggtgttattttcttgtcatcttcttactcttcatcttcttctggatatgggtatgtgagc
attgagaagcaaagacagaggcttccagtttataagtatagaactgctattctttattta
gtggagtctcacgctactaccattgttgttggtgaaacgggtagtggtaaaaccactcaa
attccacagtttttaaaagaagctggttgggctgatggtgggcgtgttatagcttgcacg
caaccaagacgactagctgtgcaggcagttgcttcaagggtagctgaggagatgggggtc
aaacttggagaagaagttggttacacaatccggtttgaagatatctctagtccagatctt
actaggatcaaatttctcacagatggagtcttacttagagaaatgatggatgatcctctt
ttgactaagtacagtgtcgttatggtggatgaggcgcatgaaagatccatttcaacagac
attgtacttggtcttctgaaaaagatccagaaacgtcgaccggagctgcgactgattata
tcttctgctacgattgaagcgaaatcaatgtctaatttcttcctgtccagtaaaaggcgc
caagcattggaaggtgaggagcttagacctaggttggagcctgctatcttatccgttgag
ggtagagggtttaatgtgcaaattcattatgtggaagaccctgtacgagactatgttcag
gctgctgtttcaacagtgctattgattaatgacaaggaaccaccaggtgatattttagta
tttcttactggtcaagatgatattgatgctgctattaagttgcttactgaagaagctcga
agcaatgggaaaaattcctcagggttgattattttgcctttatactctggacttacacgt
gcagaacaggatttgatattttctccaactcctaaaggcaagagaaaagtagtgatatca
acaaatatagcagagacatcattgactttagagggtattgtctatgttgttgatagtggc
ttctcaaaacaacgattctacaatccgatctcggatatagaaaatcttgtggtggcaccc
atatccaaggcatctgctagacaaagggctggtcgagctggtagacttagacctgggaag
tgttacagattgtatacagaagagtattttctcaatgaaatgtctattcaaggaattcct
gagatccaaaggtcaaatcttgtttcttgtgtgattcagttaaaagcattaggcattgat
aacattctgggctttgactggccggcatctccatctcctgaatcaatgatccgagcactt
gaagtactttattcacttggagtccttgatgatgatgctaaacttacttcaccagttggt
tttcaagttgcagaaattccactggaaccaatgatcgcaaaaattattttatcttcaaat
gagcttgggtgttctgatgaaatcataactattgctgctgttctctctatccagtctatc
tggttttctgctcgaggagcacaaaaggaactggatgaagccaaattgagatttgctgct
gctgagggtgaccatgttactttcctgaatatttacaaagggtttctccagtctggcaaa
tcttcaaagtggtgtcacaagaacttcataaactaccatgccatgaaaaaggtaatggaa
attcgggaactactcagaagaatagtgctgaggttgggcatagtcttgaaatcttgcgaa
acagatatgcagttggtgagaaaggcagtcactgctggtttttttgctaatgcatgccgt
ttagaggcctacagtcatggtgggatgtacaagactattagaggttcccaagaagtttat
attcatccatcatctgtgttattcagagtaaatccaaagtgtgttatataccattctctt
gtctccaccgaccggcaatacatgcgcaacgttatgtccatagatccttcttggttaact
gaggttgcaccgcatttttatcagcagcaacggcacaatcctactatccactga
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