Gossypium arboreum (tree cotton): 108487324
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Entry
108487324 CDS
T05776
Name
(RefSeq) sm-like protein LSM1A
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108487324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108487324
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108487324
mRNA degradation factors
5'-3' decay
Lsm complex
108487324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
108487324
NCBI-ProteinID:
XP_017647124
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All DBs
Position
5:1766251..1768743
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AA seq
122 aa
AA seq
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MMIAFSTLVLLPILAKLVMLLGDGRHLLGLLRSFDQFASIVLEGACERVIVGDLYCDIPL
GLNVIRGENVVLIGEMDMEKEELPSHMTAVSTAEIKRAQKAGRDATYLKGSMKNIMKSLD
ID
NT seq
369 nt
NT seq
+upstream
nt +downstream
nt
atgatgatagctttctctacacttgtcttgctacctatcttggcaaaactcgttatgtta
ttgggagatggccgtcatcttttggggttactgcgttcttttgatcaatttgctagtatt
gttctagaaggagcttgtgagcgagttattgtgggtgatttgtactgtgacatacccttg
ggtctaaatgtaatccgtggggagaatgtggtcttaatcggagagatggacatggaaaaa
gaggagcttccttcacatatgactgctgtatccacagctgagattaaaagggctcagaaa
gcagggagggatgcaacatatctgaagggctctatgaaaaacataatgaagtcccttgat
attgattaa
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