Gossypium arboreum (tree cotton): 108487365
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Entry
108487365 CDS
T05776
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03022
Basal transcription factors
gab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108487365
09124 Replication and repair
03420 Nucleotide excision repair
108487365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gab03021
]
108487365
03400 DNA repair and recombination proteins [BR:
gab03400
]
108487365
Transcription machinery [BR:
gab03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108487365
DNA repair and recombination proteins [BR:
gab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108487365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
MetRS-N
Motif
Other DBs
NCBI-GeneID:
108487365
NCBI-ProteinID:
XP_017647175
UniProt:
A0A0B0PNM7
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All DBs
Position
10:complement(2225832..2230429)
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AA seq
451 aa
AA seq
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MPQVKIIAKNFMDMVASLPAIKLDLLYRNQFICEAILRSLPPLAKKYVLQMLYIDIPITS
KSLQEWLLADGSSKHKVAIDRLIQLRVFEVIDRKKETTYKLNSTFQTNLRKHMISGGILP
REPMPQSVTARLPTSEELDAYAHEQWECFLLQLISSGQAEKSTSFSSSMMRIFQRGLLRQ
RDKEAPRLTESGFQFLLMDTNAQLWYIIREYISNSEEQGVDQADLIGFLLELSFHTPGEA
YSLDTLTDDQTTMIKDLADLGLVKLQKGRKESWFIPTKLATNLSVSLTDSSSRKQGFVVV
ETNFRMYAYSSSKLHCEILRLFARVEYQLPNLIVGAITKESLYNAFENGITAEQIVTFLQ
QNAHPRVAAKIPSVPENVTDQIRLWETDLNRVEMTPAHFYDEFPSRDVFEAASDFARMHN
GLLWEDAKKMRMVVKAEIHMLMREHLRGQNK
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaggtgaagattatcgccaagaatttcatggacatggtggcttcattgcccgcc
attaagctcgatttgctctatcgtaatcagttcatttgcgaagccattctcaggtcgttg
ccgccgctggcgaagaaatacgtgttacaaatgttgtacatcgatattcccataacatcc
aagtcgttgcaggagtggctgctcgctgatggatcatctaagcacaaagttgcaatcgat
cggttgattcagctaagagtatttgaagtaattgatcggaaaaaggaaaccacttacaag
ttaaattccacgtttcagactaatctccggaaacatatgatatctggtgggattttgcca
agagaaccaatgcctcaaagtgttactgcaaggcttccaacctcagaggagctcgatgcc
tatgcacatgagcaatgggagtgtttcttgctgcaacttataagttcaggacaagccgaa
aaatcaacgagcttcagctcttccatgatgagaatttttcagcgtggtcttttgcgtcag
agagataaagaagctccaagattaaccgagagtggtttccaattcttgttgatggataca
aatgctcagctttggtatattatcagagagtatatctccaattcagaggagcaaggtgta
gatcaagcagacttaattggttttttgctagaacttagttttcatacccctggtgaggca
tatagtttagatacactgactgatgaccagacaactatgatcaaggaccttgcagacttg
ggattggtcaaacttcagaagggcaggaaagagagttggtttatacctactaaattagcc
accaatctttcagtgagcttaacagattcatcatcaagaaaacagggatttgttgttgtg
gaaacaaactttaggatgtacgcatactcatcatctaagttgcactgtgaaattttacgt
ctattcgcaagggtagagtatcaacttccaaacctcatagttggtgcaataacaaaagaa
agcctctataatgcttttgaaaatggcattactgcggagcagatagttacattccttcag
cagaatgcacatcctcgagttgctgcgaaaataccatcggtacctgaaaatgtcacggat
cagataagattgtgggaaactgacttgaatagagttgagatgactccagctcatttttac
gatgaatttccttcgagggatgtctttgaggctgcttccgactttgctcgtatgcataat
ggtttactatgggaagatgctaagaaaatgcgtatggttgtcaaggcagagattcatatg
cttatgcgcgagcatcttcgtggtcaaaacaagtag
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