Gossypium arboreum (tree cotton): 108488326
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Entry
108488326 CDS
T05776
Name
(RefSeq) probable polygalacturonase At3g15720 isoform X1
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab00040
Pentose and glucuronate interconversions
gab01100
Metabolic pathways
Module
gab_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108488326
Enzymes [BR:
gab01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
108488326
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
108488326
NCBI-ProteinID:
XP_017648097
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Position
10:complement(10424790..10427266)
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AA seq
401 aa
AA seq
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MELIFSVFITILYVLTRGASGATNLFNVMDYGAVGDGKTDDSAAFSKAWKSTCNSPSRNP
ILVIPASKIFLLKPVTFSGPCKSTSIHVLMSGNIVAPDSKSAWKGYHLDMWLAFTNVNGL
TIIGSGTINGRGAIWWSECSSYRVPEGGTCKGPTALTFYRCNGLVLKGTKHINSQRNHIA
IFNCKDVTFSNLHISAPKTSPNTDGIDIASSSNVRILNSFIGTGDDCIAISSGSSHINIT
GIACGPGHGISVGSLGAHGGNDTVEEVHVRNCTFNETMTGVRIKTWQGGVGYARKILFEK
IKFIRADNPIIIDQYYCPGGHCKNETSGIKISDVSYRYITGTSTTDKVINLSCDQNVGCT
NIQLYYVHIISTVPGKKAYSFSFDAHGNCTHTKPVVKGLQP
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggaactgatcttcagcgtttttattacaattttgtacgtcctcacacgaggagcaagc
ggtgcaacaaatttatttaatgtgatggattatggagcagttggagacgggaaaaccgat
gattctgctgccttttccaaagcatggaaatctacctgcaattctccttcaagaaatcca
atcctcgttataccagcgtcgaagatattcttgctgaagcctgtcactttcagcggtccc
tgcaagtccacttctatccatgtattgatgtcaggaaacatcgttgcacccgattccaaa
agcgcatggaaaggttatcaccttgacatgtggcttgccttcactaatgtaaatggactt
accatcattggatctggcacaattaatggccgaggggctatatggtggtcagagtgtagt
tcgtatagggttccagagggtggaacctgcaaaggaccaacagcactgactttctatagg
tgcaatgggcttgtgctcaagggaacaaaacatattaatagccaaagaaaccacattgct
atattcaattgcaaagatgttactttctctaacctgcatataagtgccccaaaaacaagc
cctaacactgacggtatcgacatagccagttccagcaacgttcggatactgaattctttt
atcggcactggggatgattgcatagctattagctcaggttcatcccacatcaatattact
ggcattgcatgcggccctgggcatggcatcagcgttggatcattgggcgctcatggaggg
aacgacacagtggaggaagtgcatgtgcgaaattgtactttcaatgaaactatgacagga
gttagaattaagacatggcagggaggcgttggatatgcaaggaagatcttattcgagaaa
atcaagttcatccgagctgataaccctattattatcgaccagtactattgtcccggtggt
cattgcaaaaacgagacatcgggcattaagatcagcgacgtctcgtatagatacatcact
ggaacatcaaccacagacaaggtgatcaatttgagctgcgaccagaatgttggttgcacg
aacattcagctttattatgtccacataatatctacagttccagggaagaaggcctactcc
ttcagcttcgacgctcatggaaactgcacccataccaaacctgttgtgaagggactgcaa
ccttaa
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