Gossypium arboreum (tree cotton): 108488807
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Entry
108488807 CDS
T05776
Name
(RefSeq) polygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab00040
Pentose and glucuronate interconversions
gab01100
Metabolic pathways
Module
gab_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108488807
Enzymes [BR:
gab01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
108488807
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
108488807
NCBI-ProteinID:
XP_017648586
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Position
7:complement(91139283..91141077)
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AA seq
420 aa
AA seq
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MALQFNFISSMLIILLLTISSAKAQEAGGVGGRGGGDSGVIDVVAKFGAKADERTDLSKP
LLDAWKEACASTSPAKIVIPKGTYFLSTATLDGPCKAPIELQVEGIVKAPADPGAFKEPK
WIAFNRIENFKLSGGGVFDGQGTIAYKREGCDKHNFCGSLPINLRFDFLTNAMIQGVTTK
DSKQFHVNVLGCKNITFEHFTVSAPGESPNTDGIHIGRSDGVNVLNTEIKTGDDCVSIGD
GSKNLVINGVTCGPGHGISIGSLGLFKNEEPVDGVTVKNCTLTNTSNGVRIKSWPGAEPG
TCSNIHFEDITVTNVSSPIIIDQKYCPWNKCKINEESKVKLSNISFKNIHGTSALPEAVK
IICSATLPCENVELIDIEITHSGPTGPAVSQCSNVKPKVSGKQNPTACSAPVPANPTPTS
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atggctcttcaatttaattttatttcgtccatgttaataatattacttttaaccatatca
tccgctaaagctcaagaagctggtggtgttggcggtagaggaggaggagatagtggcgtt
attgatgttgttgcaaagtttggtgcaaaggcagacgagagaacagatttgagtaagcca
ttgttggatgcttggaaagaagcatgtgcctcgacatctccggcaaaaattgtgattcct
aaagggacatattttttaagtacagctaccttagatggtccttgcaaggctcctattgag
cttcaagttgaaggcattgtgaaggctccagcagaccctggtgctttcaaggagcctaaa
tggattgccttcaatagaattgaaaatttcaaattgtctggcggaggagttttcgatggc
caaggaaccattgcttataaaagggaaggttgcgacaagcataatttttgtggttcactt
cctattaacctaaggtttgattttttaaccaacgcaatgatacaaggtgtaactaccaaa
gacagcaagcaattccacgttaatgttctaggatgcaaaaatattactttcgaacatttc
acagtatcagcacctggagaaagcccaaacacagatgggattcacatcgggagatcagat
ggggtcaatgttcttaacacggagataaaaactggtgatgattgtgtttcaattggggat
ggttccaaaaatttggttatcaatggagtaacttgtggaccaggacatggtatcagtatt
ggcagtctgggattgtttaaaaatgaagaacccgttgatggagttactgtaaaaaattgc
accttgactaatacttcaaatggtgttagaatcaaaagttggccaggtgctgaacccggt
acttgttcgaacattcactttgaggatattaccgtgaccaatgtcagttctcctattata
attgatcagaaatattgcccatggaacaaatgcaaaataaatgaagaatcaaaagttaaa
ctaagcaacattagtttcaaaaacattcatggcacttctgcgcttccagaagctgtcaag
attatttgcagcgctactttgccgtgtgaaaatgtggaactcatcgacattgaaattacg
cacagtggaccgactggacctgcagtatcacaatgttcaaatgtgaagcctaaagttagt
ggcaaacaaaatccaactgcatgttccgcccctgtcccagcaaaccctacccctacctct
taa
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