Gossypium arboreum (tree cotton): 108489044
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Entry
108489044 CDS
T05776
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108489044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gab03041
]
108489044
Spliceosome [BR:
gab03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
108489044
Complex C
U5 SnRNP specific factors
108489044
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
108489044
NCBI-ProteinID:
XP_017648772
LinkDB
All DBs
Position
10:complement(11030901..11042321)
Genome browser
AA seq
2353 aa
AA seq
DB search
MWSNNNGAQIAPPGTGGSTIPPPPAAQPSYTVLAPQTTPQDAEAKLEEKARKWMQLNSKR
YGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLE
NMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRM
RFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVHAWFYDHKPLVKTKLINGPSY
RKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRD
MEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMVMYIKTEDP
DLPAFYYDPLIHPITTTNKERREKKIYDDDDEDDFVLPEGVEPLLNDTQLYTDTTAAGVS
LLFAPRPFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRP
PKAQKKKHLFRSLQATKFFQTTELDWVEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFN
LKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGLQYTFS
HVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRG
IVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQ
NKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRR
GATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFS
PIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKR
HLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPA
DSEPPPLLVYKWCQGINNLQGVWDTSEGQCVVMLQTKFEKFFDKIDLTMLNRLLRLVLDH
NIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAG
PPQMPNEFITYWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPDPNNE
NMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNP
NLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFEN
RVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIG
LNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEED
QLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTL
FQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVE
GILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTI
NRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELD
ALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKDMFDQKASNKYWI
DVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGS
KPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDD
TNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTA
EEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKF
GDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIVT
EPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQ
RQQIAEIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATN
LYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGISPPDNPQVKEI
RCIAMPPQWGTHQQVNLPSALPEHDFLNDLEPLGWLHTQPNELPQLSPQDVTSHSRILEN
NKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQML
LSDRFLGFYMIPDNGPWNYNFMGVKHTVSMKYGVKLGTPKEYYNEEHRPTHFLEFSNLEE
GETVEGDREDTFT
NT seq
7062 nt
NT seq
+upstream
nt +downstream
nt
atgtggagcaacaacaacggcgctcagattgcgccaccgggaactggtggatccaccatc
ccgccgcctccagctgctcaaccttcttacaccgtgctggctccgcagactacgccacag
gatgccgaggccaagctggaggagaaggctcggaaatggatgcagcttaactctaagcga
tatggagataaaaggaagtttggttttgtcgagacgcagaaggaggacatgcctcctgag
cacgtcaggaagattatcagagatcatggagacatgtcttcgaaaaaatatcggcatgat
aaacgtgtttatctaggggcccttaaattcattccacatgcagtttataagctccttgag
aatatgccaatgccttgggagcaggttcgtgatgtgaaggtcttataccatattacagga
gctataacatttgtgaatgaaataccatgggttgttgaaccaatttatttagcacagtgg
ggtacgatgtggatcatgatgcggagagagaaaagagatcgtcgacatttcaagagaatg
cggtttccaccatttgatgatgaggaacctccgttagactatgctgataatttgttagat
gtcgatcctctagagccaattcagttggagctggacgaagaggaagattctgccgtacat
gcatggttttatgaccacaagcctcttgtcaaaacaaagcttatcaatggtccaagttac
aggaaatggcatctctctcttccaattatggctactttgcaccggcttgctggacagctg
ctttctgatttgattgaccgtaattatttctacttgtttgacatggagtcattcttcaca
gctaaagcattgaacatgtgcatacctggtggtcctaagtttgagcctctataccgtgat
atggagaaaggggatgaggactggaatgaatttaatgacataaacaaactaattatccgg
tcacctcttaggacagaatacagaattgcttttcctcatctttataacaataggcccagg
aaagtgaagttatgtgtgtatcacactccgatggtcatgtacattaaaacagaagaccct
gatttgccagcattctactatgatcctttgatacaccccataactaccacaaacaaggaa
cggcgtgagaagaaaatttatgatgatgatgatgaagatgattttgtcttgcctgaaggg
gtggaacctttgctgaatgacacacagctttacactgacaccactgctgctggggtttct
cttttatttgctccacgtccttttaatatgagatctggtcggatgcgacgtgctgaagat
ataccacttgtctcagagtggtacaaggagcattgtcctccatcttaccccgttaaagtg
cgcgttagttatcagaaattattgaaatgctttgtgctgaatgagttgcatcatagacca
cctaaggctcaaaagaagaagcacttgttccggtctctccaggcgaccaagtttttccag
acaacagagcttgattgggttgaagcaggtcttcaagtttgcaagcaagggtacaacatg
ttgaacctgttgatacataggaaaaatttgaactaccttcacctggattataacttcaac
ttgaagcctgtgaagactctcactacaaaagagcgcaagaagtcacgttttggcaatgct
tttcatctttgtcgtgagatcttgcgtttaacaaagcttgtagttgatgctaatgtccag
tttcgacttggtaacgttgatgctttccaattggccgatggtctgcagtatacattttcc
catgtcggccagttgactgggatgtatcgatacaagtaccggctcatgagacagattagg
atgtgcaaagacttgaagcatttgatttactaccgcttcaatactgggcctgtagggaag
ggacctggatgtggattctgggcaccaatgtggagggtatggctttttttcctccgtggc
attgtccctcttctagaaaggtggttaggaaatctgcttgcacggcaatttgaagggcgt
cattcaaaaggagtagccaagactgttaccaagcaacgtgttgagagccactttgatctg
gaacttcgagctgctgtcatgcatgatgttcttgatgccatgccagagggcattaagcaa
aataaagctagaacaatattgcagcatctgagtgaggcatggcgctgttggaaggcaaac
atcccatggaaggttccgggtttgccagttcccattgagaatatgattcttagatatgtc
aagtcaaaagctgattggtggacaaatgttgctcattacaatcgtgagcgtatcagaagg
ggtgcaactgttgataaaacagtttgtaggaaaaacttaggcagattgacacgactctgg
ctgaaagctgagcaagaacgacagcacaattatttgaaagatgggccatatgtcactcca
gaagaagcggttgcgatctatactacaactgtgcattggttggagtccagaaaattctcg
cccattccatttcctcccttgtcttacaagcatgatacgaagttacttatccttgcactg
gagaggttgaaggaatcttacagtgtagctgtaagattaaatcaactccaaagagaagaa
ttgggtctaattgaacaagcttatgataatcctcacgaggccttatcaaggatcaagcgc
catttgcttacccagcgtgccttcaaagaagttggtatagagttcatggacctgtacagc
tatttgattccagtctatgaaattgagccccttgagaagattacagatgcttatcttgac
caatacctatggtatgaaggagacaagcggcatctgtttcctaattggattaagcctgca
gattcagagccacctccacttttggtttacaaatggtgtcaaggtataaataatttgcaa
ggggtatgggacacgagtgaggggcagtgtgtggtaatgcttcaaacaaaatttgagaag
ttctttgacaagattgacctgacaatgttaaacaggcttctacgattggttcttgatcac
aacattgcagattatgttactgcaaagaataatgtggtgctgtcttacaaagatatgagc
cacacaaattcgtatggtcttatacgtggtcttcagtttgcttctttcgttgtccagtat
tatggacttgttctggatctcttgcttcttggattgactcgtgctagtgagattgctggt
ccaccccagatgccgaatgaattcatcacatactgggatacaaaagttgaaacccggcat
ccaattcgtctgtactctaggtacattgatagggtgcacatattgttcagatttactcat
gaagaagcacgggaccttatccagcgatatcttactgagcaccctgatccgaacaatgaa
aacatggttggatataacaacaagaaatgctggccaagagatgcgagaatgaggcttatg
aaacatgatgttaatcttgggagaagtgtcttttgggacatgaagaatcgtctgcctaga
agcatcactactttggaatgggagaacagctttgtttctgtctacagcaaggataatccg
aaccttctttttagcatgtgtggttttgaagttcggatacttccaaaaataagaatgact
caagaagcgtttagcaatacaagagatggggtttggaatctgcagaatgaacagacaaag
gagcgaactgcagttgctttcttacgggttgatgatgagcacatgaaggtgtttgagaat
cgtgttaggcagattctcatgtcttctggatcaacaacatttacaaagatagtcaacaaa
tggaatactgccttaataggtcttatgacttacttccgtgaagcaactgtgcatacacaa
gagcttctagatctactcgttaaatgtgaaaataaaattcaaacccgtatcaagattgga
ctgaattcaaaaatgcctagtcgattccctcctgtaattttttacactcctaaagagatt
ggaggacttggcatgttatccatgggtcacatattgattccgcagagtgatctccggtac
agtcagcagactgatgttggcgtaactcactttaggagtggaatgagtcatgaagaggac
caactgattcctaatctttatcggtacatacagccatgggagagtgagttcatagactca
cagcgtgtttgggctgagtatgctctgaagaggcaggaagcacaggcacaaaataggcgc
ctaacccttgaggatttggaagattcatgggataggggaataccacgtataaataccttg
tttcagaaggacaggcacacattagcatatgacaaaggatggagagtacgtacagacttt
aagcagtaccaagttttgaagcagaacccattctggtggactcaccaaaggcatgatggc
aaattgtggaacttgaacaactatcgaactgatgttatccaagctcttggaggtgttgag
ggaattctagaacataccttgtttaaaggaacatactttccaacttgggagggtctgttt
tgggaaaaggcttcaggattcgaggagtcaatgaagtataagaagctcactaatgctcag
agatctggtcttaaccagattcctaaccgtaggtttactctttggtggtcacctacaatc
aaccgggctaatgtttacgtgggttttcaagtgcaactagatctaactggaattttcatg
catgggaagattccaaccttgaaaatatctttgattcagattttccgtgcccatctgtgg
caaaaaattcatgagagtgtggttatggatctttgccaagtcttagatcaggagttggat
gctttagaaattgaaactgttcagaaggaaacaatccatccaaggaaaagttacaagatg
aacagctcttgtgcggatattcttctctttgcagctcataggtggcctatgtcaaagcct
agtcttgtggcagagtccaaggacatgtttgatcaaaaagcaagcaataaatattggata
gatgtgcagctccggtggggtgattatgactcgcatgatattgagcgttacactcgagcc
aaatttatggactatacaacagataacatgtctatttatccatctcccactggggtaatg
attggccttgatctggcttacaacttgcattctgcatttggtaattggttccctggttca
aagccattgctcgctcaggcaatgaataagatcatgaagtcaaatccagctttatatgtc
ttaagggagaggataaggaaaggtttgcagttatattcttctgagcctactgagccgtat
ctgtcatcccagaactatggggagatcttcagcaaccagatcatttggtttgttgatgac
accaatgtgtatcgtgtgacaatacataagacatttgaagggaatctcaccacaaaaccc
attaatggtgccatctttattttcaatccacggactggacagttgttcctaaaggtaatt
cacactagtgtctgggcaggtcaaaagcgtcttggtcagcttgccaaatggaaaactgct
gaagaagttgctgctcttgtgcggtctttgcctgttgaagaacaaccaaagcagatcatt
gttacacgaaagggaatgcttgatcctttggaggttcacttactggatttccctaacata
gttatcaagggaagtgagctgcaactcccattccaggcttgcttgaaaattgagaaattt
ggtgatctaattctgaaagctacagagccacaaatggttttgttcaacatctatgatgac
tggttgaagagtatctcatcatacactgcgttctcccgactcattctgatccttcgtgcg
cttcacgtgaacaatgagaaggctaagatgttactgaaacctgataagacaatcgttact
gagccacaccatatttggccttctctaactgatgatcaatggatgaaggtcgaagttgct
ttaagagatctgatactttccgactatgccaaaaagaacaatgtgaacacatcagccctg
acacagtctgagattcgtgacatcatccttggagctgagattactccgccctctcaacag
aggcagcagatagcagagattgagaaacaggcgaaggaggcaagccagctaacagctgtg
acaactaggactacaaacgtgcatggagatgagctcattgtcaccaccacaagtccctat
gaacaagcagcatttgggtccaagacggattggcgtgttagagcaatatcagctactaat
ctttatcttcgagtgaatcatatatatgtgaactcagaggacataaaggaaactgggtac
acatatatcatgccaaagaacattttaaagaagttcatctgtatagcagatctcaggact
caaattgctggatacttgtatggaataagccctcctgataatccccaggttaaggaaatc
cgatgcattgccatgccaccgcaatggggtactcatcagcaagttaatcttccatcagct
cttcctgaacatgatttcttgaatgatctggagcctttgggatggctgcacacacagcca
aatgagcttcctcaattatcgccacaggatgtgacatcccattctcggatattagagaac
aacaaacagtgggatggagagaagtgcataatcttgacatgcagtttcactcccggttct
tgctcattaacagcctacaagcttaccccaagtggttatgagtggggacgggttaacaaa
gatacaggaagcaaccctcatggttacctcccaacgcattatgagaaggtgcagatgctc
ctaagtgatcggttccttggattttatatgatacctgacaatggtccgtggaattacaat
ttcatgggagtgaagcatacagtgagcatgaaatacggggtgaagctggggacaccgaaa
gagtactacaatgaggagcataggccgacacatttcctggagttcagcaacttggaagaa
ggtgaaactgtggaaggagatcgggaggatacttttacttaa
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integrated database retrieval system
