Gossypium arboreum (tree cotton): 108489234
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Entry
108489234 CDS
T05776
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108489234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gab03041
]
108489234
Enzymes [BR:
gab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108489234
Spliceosome [BR:
gab03041
]
Complex C
Other components
Step II factors
108489234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
Cas3-like_C_2
nSTAND3
AAA_16
AAA_30
GIPC1_GH2
TsaE
CDC45
ABC_tran
Flavi_DEAD
Sigma54_activ_2
PhoH
Motif
Other DBs
NCBI-GeneID:
108489234
NCBI-ProteinID:
XP_017649101
LinkDB
All DBs
Position
10:complement(574709..581650)
Genome browser
AA seq
1186 aa
AA seq
DB search
MASSPAQDDALKKLEFLSLVSKVSSELESHVGFADKVLAEFITDMGRHSNTVDEFDAKLK
ENGAELPDYFVRTLLTIIHAILPPKPKAADKDSKAENTGDGKKSKFKALAIADDKDRAKE
LEKEIEMEMRDRKDKDRDRDKRDRDRDRDRDRDRDRDRGRDRSRHRDRYKEEEEEEKDRR
DYGIRGRNRNRTRDNEDDRDFRNRGRNRDRDNVERDEDGGRSNGKYRDNEPELYKVYKGR
VSRVMDSGCFVELNELRGKEGLVHVSQMASRRIPNAKDVVKRDQEVYVKVISISGQKLSL
SMRDVDQNTGRDLLPLKKSSDDDSFRTNPSGGKEGPVTRTGLSGIRILEDEDAAPSRRPL
KRMSSPERWEAKQLIASGVLRLDEYPMYDEDGDGMLYQEEGAEEELEIEMNEDEPAFLQG
QTRYSVDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWED
PMPETGERHLAQELRGVGLSAYDMPEWKKDAYGKALTFGQRSKLSIQEQRQSLPIYKLKK
ELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAE
EFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTI
HTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQP
ESDYLDAALITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPV
YSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVVDPGFAKQNVYNPKQGLD
SLIITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGMITLQM
KAMGINDLLSFDFMDPPPPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKM
LLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAW
KAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVVCAGKNFTKIRKAITAGFF
FHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVVDPKW
LVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atggcatcatcgcctgcccaggacgatgctttgaagaaactcgaatttctctctctcgtc
tccaaagtcagttccgagctcgagagccatgttgggtttgccgataaggttttggccgaa
ttcatcaccgacatgggccgtcactctaacactgtcgatgaattcgatgccaagctcaaa
gaaaacggtgccgagttgcccgattacttcgttcgcacgcttctcactattatccacgcg
atcctgcctccgaaacccaaagcagccgacaaggattccaaggcggaaaacaccggtgac
ggtaagaagtctaaatttaaagctttagcgattgctgatgataaggatagagccaaagaa
ctagagaaggaaattgagatggagatgcgagataggaaggataaggatagggatagggat
aagagggacagagatagagatagggatagggatagggatagggatagagataggggcaga
gataggagtaggcatagagatagatataaggaggaggaggaggaggagaaggataggagg
gattatggcattcgaggaagaaataggaatcgaacccgggataatgaggatgacagggat
tttaggaataggggcagaaacagggaccgggataatgtggaacgtgatgaagacgggggc
aggagtaatgggaagtatagggataatgagcctgaattgtataaggtatacaaggggagg
gtttcgagagtgatggattcgggttgtttcgtagagttgaatgagttaaggggaaaggag
ggtttggttcatgtttcccagatggctagtagaaggattcccaatgctaaagatgttgtg
aaacgggatcaggaggtttatgtgaaggtaatttcgatttcaggtcagaagttgagtttg
tctatgagagatgttgatcagaatactggtagggatttgctgccattgaagaagagttca
gatgatgattcctttagaaccaatccttcaggggggaaagaagggcccgtgacaagaact
ggtctttcagggattaggattctagaggatgaggatgctgccccatcgcgtaggcctttg
aagagaatgagttcaccggagaggtgggaagccaaacagttgattgcttctggtgttttg
agactagacgagtatccaatgtatgacgaggacggagatggaatgctttatcaagaagag
ggtgccgaggaagagttggagattgagatgaatgaggatgaacctgcctttttacaaggg
cagactaggtactctgtcgatatgtcaccagtaaaaatatttaaaaatccagaagggtcc
ttgagtcgagccgctgctctccagtctgcacttattaaggaacggagagaagtacgagag
cagcagcagaggacaatgctggattcaattccaaaggatcttaatcgtccttgggaagac
ccaatgccagagactggtgagaggcatcttgcgcaggagcttagaggtgttggattgtca
gcatatgatatgcctgaatggaagaaggatgcttatggaaaagctttgacttttggacag
aggtctaaactttcaattcaagagcagaggcagagccttcccatttataaactgaaaaaa
gaactcattcaagctgtgcatgacaatcaggtactggtggtcattggtgagactggttca
ggtaagactacacaggtaacccagtaccttgctgaggctgggtacactacaaggggtaag
atcggatgtactcaacctcgtagggtggctgcaatgtctgtggcgaagagggtagctgag
gaatttggttgtcggttaggggaggaagttggttatgctattcgctttgaagattgtact
ggaccagatactgtcatcaagtacatgactgacggcatgcttctaagggagattctgatt
gatgagaatctttctcaatactcggtcattatgcttgatgaagcacatgagcgtacaatt
catactgatgtcctttttgggttattgaagcagcttgtgaaacggaggcctgatcttcgt
ctgattgttacatctgctacactggatgcggagaagttttcagggtatttcttcaactgt
aatattttcacaattcctgggagaacgtttcctgtggagatactctatacgaaacagcct
gagagtgactacctagatgctgccttgataacagtcctacagatacacttgactgaacct
gaaggtgacattctcctcttcttgactggtcaggaggaaattgattttgcatgccagtct
ctttacgagaggatgaaagggctaggtaaaaatgttccagagttgattattttaccagtt
tatagtgcccttcctagtgaaatgcagtctaggattttcgatccagcacctccagggaaa
aggaaggtggtggtggcaaccaatattgctgaggcttctttaactatagatggaatattc
tatgtggttgatcctggttttgcaaaacaaaatgtttataatccaaagcaagggcttgat
tccctaatcataacaccaatctcacaagcatcagcaaagcaacgtgctgggcgtgctgga
cgtactggacctggaaaatgctaccgcttatacactgaaagtgcatatcgaaatgagatg
tcacctaccacaattcctgaaatccagaggattaatcttggcatgataacactacaaatg
aaggccatgggcataaatgatctcctttcttttgattttatggatccccctccaccccaa
gctctcatttctgccatggagcaattatacagtctaggggctcttgatgaggagggactt
ttgactaaattgggtagaaaaatggcagaatttcctcttgatcctccactatccaagatg
ttactggccagcgtggacctcgggtgtagtgatgagatattgacaattattgcaatgatc
caaacaggtaatatcttctacaggccaagggaaaagcaagctcaggctgatcagaagagg
gccaagtttttccagcctgaaggagatcatttgactctacttgctgtatatgaagcttgg
aaagcaaagaacttttcaggaccttggtgttttgaaaattttgttcagtctagatccttg
aggagggcacaggatgtcagaaaacagcttctcagcatcatggataagtacaaattggat
gtagtgtgcgccggaaagaactttacaaagatcaggaaagctatcacggcagggttcttt
ttccatgctgctaggaaagacccgcaggaaggatatagaacactggtggagaaccagcct
gtttatatacacccaagcagcgccctgtttcagagacaaccggactgggtgatctaccat
gagctggtaatgactacaaaggagtacatgcgagaggtaacagtcgtagatcccaagtgg
ctggttgaactggctcccaggttctttaaagtagcagatcccacgaaaatgagcaagcgg
aagcgtcaagaacgaattgaaccactttatgatagatatcatgaacctaattcttggcgg
cttagtaaacgacgagcttga
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