Gossypium arboreum (tree cotton): 108489265
Help
Entry
108489265 CDS
T05776
Name
(RefSeq) flowering time control protein FY isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108489265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108489265
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108489265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
EIF3I
WDR55
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_Aladin
Beta-prop_WDR41
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_WDR75_1st
WD40_RFWD3
NBCH_WD40
Beta-prop_Vps41
Tricorn_2nd
Beta-prop_HPS5
WD40_like
Beta-prop_RIG_1st
WD_LRWD1
WDR54
VPS8_N
Motif
Other DBs
NCBI-GeneID:
108489265
NCBI-ProteinID:
XP_017649159
LinkDB
All DBs
Position
10:115041930..115050415
Genome browser
AA seq
719 aa
AA seq
DB search
MMYGDPQQQQQNQPHPQAGEFQRGPPPPQMMRQPSASSTTLNSEYHHPGAPPPQMPPYDA
HGDNFAAKRMRKLTQRRAVDYTSTVVRYMQIRMSQRDSRDRTTLQPTPAAAIDMLPTAAY
LDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ
AHDQAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKVNKSAHKESVRDLSFCRTDLKF
CSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDNVVKLWDAKTGR
ELCSFHGHKNTVLCVKWNQNGNWVLTAAKDQIIKLYDIRSMKELESFRGHRKDVTALAWH
PFHEEYFVSGSFDGSIFHWLVGHETPQIELPNAHDNSVWDIAWHPIGYLLCSGSNDHTTK
FWCRNRPGDTPRDKFNIGQNQGYGEQNPALAGRMPGNFAAPEGPTTPGPFATRNEGTIPG
IGVPMPLSVPSLDASSQGDQKQLHPGSLPFGAPPLPPGPHPSLLANQQHGYQQNPQQIQQ
QQQQGMQQQMPPMPMGPPNMQLQPPSHMPLLPHPHLQRPPPQMPPLGMASQMPGSLNPPS
SMPTSHPMPMPGPMGMQGTMNQMPPSMPQGHFMGMNPMHSGSLPTSGGPSVGGFPNGMQN
MQGPGNMGGGQMYPQGSGFNRAQGGQMPMMPGYNPYQSGGQSGMPPPPTGPPPHGQTPQ
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgatgtacggtgatccacaacagcagcagcagaaccagccgcacccgcaagctggggag
tttcagagaggtcctccgcctccgcaaatgatgcggcagccatctgcatcttccactact
cttaactcagagtaccaccaccctggtgctcctcctcctcagatgccgccttatgacgct
catggtgacaattttgctgcgaaaagaatgagaaagctgactcaaaggagagctgttgat
tatactagtactgttgtgcgatatatgcagattcgaatgtcacagcgggattcacgggac
aggacaacattgcagcctacaccagcagcagcaattgatatgttgccgacagctgcttat
ttagataatccatccacaagctttgctgccaaatttgttcatacatctctgaacaaaaac
cggtgttctataaatcgcgttttgtggactcccacgggtagacgtcttatcacagggtct
cagagtggagaatttactctatggaacggacaatcattcaattttgaaatgattcttcag
gcccatgatcaagctatcaggtctatggtatggagtcacaatgacaactggatggtttct
ggtgacgatggtggtgcaataaagtattggcagaacaacatgaataatgttaaggtcaat
aagtctgctcacaaagaatcagttcgtgacttaagtttttgtaggacagatttaaagttt
tgttcctgttctgatgatactactgtaaaagtatgggactttgcccggtgccaggaggag
cgttcattaactggccatggttgggatgtcaaaagtgttgattggcatcctacaaaatcc
ttactggtttcaggtggaaaagacaacgttgtgaaactttgggatgctaagacagggaga
gagctttgctcatttcatggccataaaaatacagtcctttgtgtcaaatggaaccagaat
gggaactgggtgttgactgctgcaaaggatcaaatcattaagctctatgacattagatct
atgaaggaacttgaatctttccgaggccacaggaaggatgtgactgcattggcttggcac
ccattccatgaagaatactttgtcagtgggagctttgatggctctattttccattggctg
gttgggcatgaaacaccccagattgagcttcccaatgcacatgataatagcgtctgggat
attgcctggcatcctatcggatatcttctatgcagtggtagcaatgatcacaccacaaag
ttttggtgcagaaataggcctggagatacccctcgtgataaatttaacattggtcaaaat
caaggctatggtgagcaaaatcctgcattagctggtcgcatgcctggtaattttgctgca
cccgaaggcccaacaactccggggccatttgcaacccggaatgagggaacaatccctggc
atcggagttcccatgccattatcagttccatctcttgatgcatcttctcaaggggatcaa
aagcagcttcatcctggttccttgccttttggagctcctcctcttcctcctggaccacat
ccatctcttctagccaatcagcagcatggatatcaacaaaaccctcaacaaattcagcaa
cagcagcaacagggaatgcaacagcaaatgcctcctatgccaatgggacctccaaatatg
cagctacaacctccatctcacatgcccctgcttccacatcctcatttacaacgccctcct
ccccaaatgcctcctcttggtatggcttcacaaatgccaggatctttgaatccaccttca
tcaatgccaacatcacatccaatgccaatgcctggtccaatgggtatgcaaggtacaatg
aatcagatgcctccttcaatgccacaaggtcattttatgggcatgaatccaatgcactca
ggatcattacccaccagtggtggcccttcagttggaggttttccaaatggtatgcaaaat
atgcagggccctggaaatatgggtggtggccaaatgtatccacagggtagtggattcaat
cgtgcacaaggtggtcagatgccaatgatgcctgggtacaatccatatcagtctggtggt
cagtctggtatgcctccaccgccaacaggtcccccaccacatggccaaactccgcagtaa
DBGET
integrated database retrieval system
