Gossypium arboreum (tree cotton): 108489355
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Entry
108489355 CDS
T05776
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
108489355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gab04121
]
108489355
Ubiquitin system [BR:
gab04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
108489355
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_6
LRR_4
F-box-like
F-box
LRR_NXF1-5
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
108489355
NCBI-ProteinID:
XP_017649338
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Position
8:complement(126443403..126447036)
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AA seq
586 aa
AA seq
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MHKKMAFSFPDEVLEHVFSFIQSDKDRNAVSMVCKSWYEIERWCRRKVFVGNCYAVSPRM
VIRRFPEFRSIELKGKPHFADFNLVPDGWGGYVFPWIAEMAGAYPWLEEIRLKRMVVTDE
SLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAASCKNLKELDLRDCEVDDLSAHWLSHFP
ETYTSLVSLNISCLGSDEASFSALERLVRRCTNLKTLRLNRAVPLDKIANILRHAPQLVE
FGTGTYTADVRPDVYSDLAGVFSSCKELKSLSGFWDVIPDYVPAIYPVCSKLTSLNLSYA
TIQSPDLIKLVSHCPNLQRLLVLDYIEDSGLEVLASSCKDLQELRVFPSDPFGAEPNVSL
TEQGLVAVSLGCPKLQSVLYFCRRMSNEALVTIARSRPNFTRFRLCIIEPKTADYLTLEP
LDVGFGAIVQYCKDLRRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVLSG
CESLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCAVSFAACKLLGQKMPRLNVEVID
ERGPPDSRPENCPVDKLYIYRSIAGPRFDMPPFVWTMDEDSGLRLS
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgcataagaaaatggcgttttcgttcccagacgaggtgctagagcatgtgttctcgttc
atacaatcagataaagaccggaacgcggtgtcgatggtgtgtaaatcgtggtacgagatc
gagcgttggtgtcggaggaaagtgtttgtggggaactgttacgctgtgagcccaaggatg
gtgatcagacgtttccccgagtttagatccattgagttgaaagggaaaccgcactttgcg
gatttcaatctggtgccggacggatggggaggttacgtgtttccttggatcgcggagatg
gctggagcttatccttggctcgaagagattcgacttaaaaggatggtcgttaccgacgaa
agcttggagcttattgctaagtcgtttaagaacttcaaagtattggtgctttcttcttgt
gaagggttttcaactgatggtctcgctgccattgctgctagctgcaagaatctgaaagag
ctggacttgcgagactgtgaagtggatgatttgagtgcgcattggctcagtcattttccc
gaaacatacacatcactggtgtcccttaacatttcttgcttagggtctgatgaagctagt
ttttcagcgttggaacgtctggtgcgtagatgtactaacctcaagactcttcggctcaac
cgtgcggtgcccctggataagattgccaacattttacgtcatgcaccgcagctggttgaa
ttcggtactggtacctacacggctgatgtacggccagatgtctactcagatttggccggg
gtgttttctagttgcaaggaactaaagagcttgtctggattttgggatgtgatcccggat
tacgttcctgccatttaccctgtctgctctaaattaacatcactgaacctgagctatgct
actatacaaagtcctgatcttatcaagcttgtaagccactgtccgaatttgcagcgccta
ttggtacttgattacattgaagatagtgggcttgaggtgcttgcatctagttgcaaggac
ttgcaagaattacgcgtgtttccatctgatccatttggtgcagagccaaatgtgtccttg
acagaacagggccttgttgccgtatctttgggttgtcccaagctacaatcagtattgtac
ttctgccgccgaatgtctaatgaggcattagttaccattgctcgtagccgtccaaacttc
acaaggtttcgcctttgtataattgagcctaaaacagctgattacctgactctcgagcca
cttgatgttggttttggagccattgttcagtactgcaaggatctcaggcgtctttccctc
tctggtcttcttacagatcgtgtattcgaatatattgggacatacgcgaagaaacttgag
atgctgtctgtggcttttgcaggagatagtgatttgggactacatcatgtgctttccggg
tgtgaaagccttcggaaactggagatcagagattgcccctttggtgacaaggctcttttg
gccaatgctgcaaagctggagacaatgcgatccctttggatgtcttcttgcgctgtgagc
ttcgcagcatgtaagctgctaggtcagaagatgccaaggttgaatgttgaagttatagat
gagaggggacctcctgattcaagaccagagaactgcccagttgataagctctacatatat
aggtccattgcagggccaaggttcgacatgcctccttttgtttggacaatggatgaagat
tctggattgaggctttcatga
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