Gossypium arboreum (tree cotton): 108489384
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Entry
108489384 CDS
T05776
Name
(RefSeq) pre-mRNA-processing factor 39-1-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gab03041
]
108489384
Spliceosome [BR:
gab03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
108489384
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
UTP6_C
NRDE-2
TPR_12
TPR_16
TPR_MalT
TPR_10
Motif
Other DBs
NCBI-GeneID:
108489384
NCBI-ProteinID:
XP_017649433
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All DBs
Position
7:complement(63081189..63100830)
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AA seq
814 aa
AA seq
DB search
MGDSEAVVADSSAMMDYTSAAYNSAGSGAYSSQATGYPTASGGHPNSAGQEGQSSEMYDG
KPAGGSTDETAVAVGNSAADASKAAGCNYPLNGNVVNAAGNATTVENGNAFDNLGGASAA
PEFVDGSAPTMSAEEERLWSILRANSLDFNAWTALIEETEKVAENNILKIRKVYDAFLAE
FPLCYGYWKKYADHEARIGSMDKVVEVYERAVQGVTYSVDIWVLYCAFAIETYGDPETIR
RLFERGLAYVGTDYLSFPLWDKYIEYEYMHQEWSRLAAIYTRIFENPNQQLDRYFNSFKE
LAGSRPLSELRTAEEAAANVSGPVSEADGQVNEREVHPDAAEQMQKPLTAGSTDAEELEK
YVAIREELYKKAKELDSKIIGFETAIRRPYFHVRPLNVAELENWQNYLDFIEREGDFNKV
VKLYERCLIACANYPEYWIRYVLCMEASGSMDLANNALVRATQVFVKRQPEIHLFAARFK
EQNGDIEGAQAAFHLVHSEISPGLLEAIIKHANMECRLGKLEDAFSLYEQAIAIEKGKEH
SQTLPMLYAQYSRFSYLVSGNAKKAREILTGALDHVHLSKPFLEALIHFETILPPPRQID
YLQSLVDKFISPNSDGSAADKEDLSSIFLEFLSLFDDVQSIKEAEDRHAKLFLPHRPMLE
LRKRHAEEFLSSDKTKLVKSYSGAPSPGQSLMGAYPNAQNQWPAGYGAQPQTWPPTTQAQ
AQAQAQPWTSGYSQQAAYGAYSSYGSNYAAPQVPTSVPQIASYGAYPATTYPMQSFPQQS
YAQPAAATTLTPAQQPPPAAAAAAPQAYYGGPYY
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgggagatagtgaagcagtagttgccgactcatcagcaatgatggattatacttcagca
gcctataattctgctggttctggcgcttactcctcccaggctactggatatcctactgct
tctggtggtcatccaaattctgctggtcaagaaggtcaaagcagtgaaatgtatgacggt
aagccagctggtggatcaacagatgagactgctgttgcagttggaaatagtgcagcagat
gcatcaaaagctgctggttgtaattatcctctaaatggaaatgttgttaatgcagcagga
aatgcaaccacagttgagaatggaaatgcttttgataatttaggtggtgcttctgccgca
ccagagtttgtggatggttctgcaccaaccatgtctgctgaagaagaacgtttatggagt
attttgagagccaattcattggattttaatgcttggactgcattgatagaggaaacagag
aaggttgcagagaacaatatactgaaaattcggaaggtttatgatgctttcttggctgag
tttcctttgtgttatggttattggaaaaagtatgcggatcatgaagcacgcataggctcc
atggacaaagttgtggaggtctatgaaagagcagttcagggtgtgacatattctgtggat
atctgggtgctatattgtgcttttgccattgaaacatatggagatccagagaccatccga
aggctttttgaacgaggattagcatatgttggaactgattatctatctttccctctttgg
gataagtacattgaatatgaatacatgcaccaggagtggagtcgccttgctgctatttat
actagaatatttgagaaccctaatcaacagctagataggtatttcaacagtttcaaagag
ttggctggaagtcgacctttgtcagaattaagaactgctgaggaagctgctgccaatgta
tcaggtccagtttcagaggctgatggccaagtcaatgaaagagaggttcatcctgatgct
gcagaacaaatgcagaagcctctaacagctggctcaacagatgcagaagagttggagaag
tatgttgccattagagaagagctatataaaaaggccaaagagctcgattctaagatcatt
ggttttgaaacagctatcagaaggccttactttcatgtgcggcccctcaatgttgctgag
cttgaaaactggcagaactacctggactttatagaaagagagggtgacttcaataaggtg
gtcaaattatatgaaaggtgccttatagcatgtgccaattatcctgagtactggatacga
tatgttttatgtatggaagccagtggaagcatggatcttgctaataatgcacttgtgcgt
gctacgcaagtcttcgtcaagaggcaaccagagatccatctttttgcggctcgattcaag
gagcagaatggggacatagaaggtgctcaagctgcgtttcaccttgttcacagtgaaata
tcaccaggtcttcttgaagcaattatcaagcatgcaaatatggaatgccgtctggggaaa
ctggaagatgccttctctttatatgaacaagctattgccattgaaaaaggaaaagagcat
tctcaaacattaccaatgctgtatgcacaatattctagattttcttacttggtttctgga
aatgcaaagaaggccagggaaattttaactggagcacttgaccatgtccacctgtctaaa
ccattccttgaggccttaatacattttgaaacaattttaccaccaccaaggcagattgat
tatttacagtcattggttgacaagtttatatccccaaactcagatggcagtgctgcagac
aaggaagacctatctagcatatttttggagttcttgagtctctttgacgatgtacagtcc
attaaagaggcagaagatcggcatgctaagctatttttacctcataggcccatgttggaa
ttaagaaaacgtcatgctgaagaatttttatcttcagataagacaaagcttgtgaaatct
tactctggtgccccttcacctggccagtctttgatgggtgcctatccaaatgcacaaaac
cagtggccagctggttatggggcacagcctcaaacttggccccctactacacaggcacag
gcacaggcacaggcacaaccatggacttctggctacagccaacaggctgcatatggtgca
tatagcagttatggtagcaattatgcagctccacaagtgcccacatcagttccacaaatt
gccagttatggtgcttacccggctacaacatatccaatgcagagctttcctcagcaaagt
tatgctcaaccagctgctgccacgactttaaccccagcgcagcaacctcctcctgctgct
gctgctgcagctcctcaggcttattatggtggaccttactattga
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