Gossypium arboreum (tree cotton): 108489417
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Entry
108489417 CDS
T05776
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab00040
Pentose and glucuronate interconversions
gab01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108489417
Enzymes [BR:
gab01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108489417
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
108489417
NCBI-ProteinID:
XP_017649449
UniProt:
A0A0B0MIE4
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Position
11:complement(16247986..16252251)
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AA seq
445 aa
AA seq
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MEISRRFFFSSFTLLLVMLFVCVNGSAEKTELNSRLAEGNKLQGLKNSSTADGLDDDKWK
NEHAVDNPEEIASMVDMTIKNSTARRNLGYFSCGTGNPIDDCWRCDRRWYRRRRRLASCG
IGFGRNAIGGRDGRYYVVTDPGDDNPVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQEL
IMNSFKTIDARGVNVHIAYGACITIQYVTNIIIHGLHIHDCKPTGNAMVRSSPSHYGWRT
MADGDGISIFGSSYIWIDHNSLSNCADGLIDAVMGSTAITISNNYFTHHNEVMLLGHSDS
YVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGN
RYLAPVNPFAKEVTKRVDTYSDEWKHWNWRSEGDLLLNGAYFTPSGAGRAANYARASSLS
AKSSFLVGTLTSNAGALACRPGRMC
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggagatttctcggagattcttcttctcttcatttacgttgctacttgttatgttgttc
gtttgtgtcaatggctcagcagagaaaacagagctgaactcaaggcttgctgaaggaaac
aaattgcagggcttgaaaaactcatcaacggcagacgggttggatgatgataaatggaaa
aatgagcacgcagtcgacaatcctgaagaaattgcttcaatggttgatatgaccataaaa
aatagtacagcaaggagaaacttgggatatttctcgtgtggaacagggaatccaatcgat
gactgttggagatgtgaccgacgatggtatcgtaggagaagacgccttgcaagctgcggc
attgggtttggacgcaatgctattggtggtcgtgatggaaggtactatgttgtgactgac
cctggcgatgataaccctgtgaaccccaaaccaggaaccctccgccatgctgttatccaa
gacaggcctctttggatcgtgttcaagcgtgacatggtgatcacgttgaagcaggagctg
ataatgaacagttttaagacgattgacgctcggggcgtcaacgtgcatattgcttacggg
gcctgtatcaccatccagtatgtcaccaacattatcatccatggactccacattcatgat
tgcaagcccaccggcaacgccatggtccgtagctccccttctcattacggatggagaacc
atggctgacggtgatggcatttcaattttcgggtcgagttacatctggatcgaccacaac
tcgctgtctaattgtgccgatggacttatcgatgctgtaatgggatccactgcgatcaca
atctcaaacaactacttcacccatcacaatgaggttatgctgttgggacatagtgactct
tatgtaagagacaagcagatgcaagtcaccattgcttataatcatttcggtgagggcctt
atccagagaatgccaaggtgtagacacggatatttccatgtcgtaaacaatgactacacg
cactgggaaatgtatgcaattggtggaagtgcaaatcccaccattaacagccaaggcaac
cgttaccttgcccctgttaatccctttgctaaggaggtgacaaagagagtggacacatat
agtgatgaatggaaacattggaattggaggtcggagggagacctgttgttgaatggagct
tatttcactccatcaggtgctggaagagctgccaactatgccagggcctcgagcttgagc
gccaaatcgtctttcttggtcggcacccttacttcgaatgcaggtgcccttgcctgccgc
ccaggccgcatgtgctaa
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