Gossypium arboreum (tree cotton): 108489528
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Entry
108489528 CDS
T05776
Name
(RefSeq) phytochrome B
KO
K12121
phytochrome B
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
108489528
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
PAS_4
HisKA
PAS_9
PAS_8
PAS_3
Diguanyl_cycl_sensor
Motif
Other DBs
NCBI-GeneID:
108489528
NCBI-ProteinID:
XP_017649639
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Position
10:110782384..110787997
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AA seq
1199 aa
AA seq
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MTAASSCPRGSVTTLPPKPIPYNLHYIYTTDRISSQKYHHPRKNKQPLNKVMSSGSRAVH
SHQQRQQQRQQQQQQQQQQQAESSGTTNMRASHTHHQADSISKAIAQYTVDARLHAVFEQ
SGESGKSFDYSQSVKTTTQSVPEQQITAYLSKIQRGGHIQPFGCMIAVDEPSFRIIAYSE
NAREMLGITPQSVPNLERIEVLTIGTDVRTLFTPSSAVLLEKAFAAREITLLNPVWIHSK
NSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISELQSLPGGDIKL
LCDTVVESVRQLTGYHRVMVYKFHEDEHGEVVAESKRPDLDPYLGLHYPATDIPQASRFL
FKQNRVRMIVDCHATPVRVVQDDGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLAMAV
IINGNDDEATGGRNTMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFALQLNMELQLAAQ
MSEKRVLRTQTLLCDMLLRDSPSGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPSEAQ
IKDIVEWLLAFHGDSTGLSTDSLSDAGYPGAASLGDAVCGMAVAYITKRDFLFWFRSHTA
KEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWDNAEMDAIHSLQLILRDSF
KDAEASNSKAVVHAQLGGLELQGVDELSSVAREMVRLIETATAPILAVDVEGRINGWNAK
AAELTGLSVEEAMGKSLVHDLVYEEYQETVDRLLSHALQGEEDKNVEIKMRTFGLEDHKK
AIYVVVNACSSKDYMNNIVGVCFVGQDVTGQKVVMDKFIHIQGDYKAIVHSPNPLIPPIF
VSDENTCCLEWNTAMEKLTGWPRGEIIGKMLVSEVFGSCCRLKGPDALTKFMIVLHSAIG
GQEADKFPFAFFDRNGKFVQALLTANKRVNMEGQIVGAFCFLQIATPELQQALRVQRQQE
KKCFARMKELTYICQEIKSPLNGIRFTTSLFESTELTENQKQFIETSVACEKQMLKIIRD
VDLESIEDGSMELEKAEFFLGSVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQA
RIQQVLADFLLNMVRYAPTGEGWVEIHVRPSLKQISEGVTIVHTEFRMVCPGEGLPPELV
QDMFHSSRWMTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLITLELPVPRSGSKNED
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atgacagcagcatcttcttgcccacgtgggtctgtcacaactttgcccccaaaacctatc
ccttacaatttacactacatttacactacggacagaatttcctcccaaaaatatcatcat
ccccgcaaaaacaagcaaccacttaacaaagtcatgtcttcaggcagcagagcagttcac
tcccatcagcaacgccaacagcagcggcagcagcagcagcagcagcagcagcagcagcaa
gctgagtcctcaggcacaactaacatgagagcatcccatacccaccaccaggctgactct
ataagcaaagccattgctcagtacacagtcgatgctcgcctccacgctgttttcgagcag
tcgggggaatcgggtaagtcatttgattactcccaatccgttaaaactactacccaatcg
gttcccgagcagcaaatcactgcttacttgtctaaaatccaaagagggggccacatccag
ccatttggctgcatgattgcggttgacgagcccagtttccgtatcatcgcctacagcgaa
aacgcacgcgagatgcttgggattacccctcaatcagttcccaatttggagaggatcgaa
gttctcacaattgggaccgatgttcgaacccttttcactccttccagcgctgttttgttg
gaaaaagccttcgccgcccgcgagatcacgttgctgaatccggtttggattcactcgaag
aattctgggaagcccttttacgctattttacataggattgatgttggaattgtgattgat
ttagaacctgctagaactgaggatcctgccttgtctattgctggggctgtccaatcgcag
aaattagctgtccgtgctatttctgagttacagtccctccctggaggcgatattaagctt
ttgtgtgacacggttgtggaaagtgtgagacagcttactggatatcatagggtaatggtt
tataaatttcatgaggatgagcatggggaggtcgtggccgagagtaaaaggcctgacttg
gacccttacttaggtttacattatccggcaacggatattccccaggcttcaaggtttttg
tttaagcagaatagagttaggatgatagtggactgtcatgccacgccagtgcgtgtggtt
caggatgatgggttaatgcaacctctgtgtttggttggatccactcttcgggcccctcat
ggttgccatgctcagtatatggctaacatggggtcaattgcttctttggcgatggcagtt
attatcaatggaaatgacgatgaagctactgggggaagaaatacaatgaggctttggggt
cttgttgtttgtcatcatacttctgcacgttgtattccatttccacttcgatatgcttgt
gagttcctaatgcaagcatttgcacttcaactgaatatggaattgcaattggcagctcaa
atgtcggagaaacgtgttttgaggactcaaactcttttgtgtgatatgcttcttcgtgac
tctccatctggcattgtcacgcaaagtcccagcattatggatcttgtgaaatgtgatggg
gctgccctttattaccaaggtaagtattacccattaggtgtgacgccatctgaggcccag
ataaaagatattgtcgagtggttgttggcattccatggagattcgactggtttaagcacc
gatagtttgtctgatgctggttaccctggggcagcctcacttggggatgcagtttgtggg
atggctgttgcttatattactaaaagggattttctattctggttccggtcacacacagca
aaagagatcaaatggggtggtgcaaagcatcatccagaggacaaagatgatggtcaaaga
atgcatccacgatcttcattcaaggcatttttggaagtggtcaagagtcgaagtttgcca
tgggataatgctgaaatggatgcaattcactcactgcagcttattcttcgtgactcattc
aaggatgctgaagcaagtaattctaaagccgttgtacacgctcagcttgggggactagag
ctacaaggggtggatgagcttagttcagttgcaagggaaatggtaaggttaatagagact
gcaactgctcccatattggccgtagatgttgaaggtcgcattaatgggtggaatgcaaaa
gctgcagaattaacaggactctcagttgaggaagccatggggaagtctttggttcatgat
cttgtttatgaggaatatcaagaaacggttgacaggcttcttagtcatgctttgcaaggt
gaagaagataaaaatgtagagataaaaatgaggacttttggcttagaagatcataaaaag
gctatatacgtggtggtgaacgcttgctctagtaaggattatatgaataatattgttgga
gtttgctttgttggtcaggatgttacaggccaaaaggtggtgatggacaaattcatccac
atacaaggtgattacaaggccattgttcatagtcccaatcctttgattccaccaatattt
gtttctgatgaaaacacatgttgcttggagtggaacactgccatggaaaagctcactggg
tggcctcggggggaaatcatagggaaaatgttagttagtgaggtttttggcagttgctgt
cgcctcaagggtccagatgctttgacaaaattcatgattgttttacatagtgcaattgga
gggcaggaggcagataagttcccttttgccttctttgaccgcaatgggaaatttgttcag
gcactgttgacagcaaacaaaagggtgaatatggaaggccagattgtaggagcgttttgt
ttcctgcagattgcaactccagagttgcagcaagcactgagagtccagaggcaacaggag
aaaaaatgctttgctagaatgaaagagttaacctacatttgccaggaaataaaaagtcct
ttgaatgggatccgttttactacctcactttttgaatctacagagctgactgaaaaccaa
aagcaatttattgagactagtgttgcttgtgagaagcaaatgttgaagatcataagagat
gttgatttggagagcattgaggatggttctatggagcttgaaaaggctgaatttttcctt
gggagtgtcataaatgctgttgttagccaagtaatgctactgctgagggaaagaaatcta
cagttaattcgggatataccagaggagatcaaaacattggctgtttatggcgatcaagca
agaattcaacaggtgttggctgattttttgttgaatatggttcgttatgcaccaactggt
gaaggttgggtagagattcatgttcgtccatctttgaaacaaatatccgaaggagtcacc
attgttcatacagaattcaggatggtatgccccggtgaaggccttcctcctgagttggtt
caagacatgttccatagcagtcgatggatgacacaggagggcttagggttgagcatgtgc
cggaaaatcttaaagctcatgaatggtgaggtccaatatatcagagagtcggaaagatgt
tatttcttaattactctagaacttcctgtacctcggagtggctcaaaaaatgaagactag
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