Gossypium arboreum (tree cotton): 108489711
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Entry
108489711 CDS
T05776
Name
(RefSeq) putative pectate lyase 21
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab00040
Pentose and glucuronate interconversions
gab01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108489711
Enzymes [BR:
gab01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108489711
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
DUF1803
Motif
Other DBs
NCBI-GeneID:
108489711
NCBI-ProteinID:
XP_017649905
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Position
5:complement(92596709..92598532)
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AA seq
414 aa
AA seq
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MQCVNVNIKNSHLSIVAKSFLEMARFYLVSLLICLHATLTFSRHVPQQISEPVPRYSTRR
QLDMEQCRTGNPIDDCWRCDPEWEANRRKLADCAVGFGKNAIGGRDGDVYVVTDSGNDDP
LNPTPGTLRHAVIQTEPLWIIFDHDMVINLREQLLINSYKTIDGRGHDIQITSGPCITLH
NVSNVIIHNIYIHKCLPSGYAMVWDPFPHSGSDGDGISIFGSRDVWIDHCTLANCYDGLI
DATYGSTSITISNNYMLHHNEVMLMGHSDEFLDDKNMQVTIAFNYFGEGLVQRMPRCRHG
YFHIVNNVYTGWQMYAIGGSANPTINSQGNVFVASDSNYSKEVTKRESYFDEWKNWNWRS
EGDMMLNGAFFTPSGEEASESYIKASSMVARPSSLLTKTAQFAGSLRCRKGYGC
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgcaatgtgtaaacgttaatataaaaaatagtcatctctccattgtagctaaaagcttc
cttgagatggcaaggttctatctagtttccctactcatatgcttacatgctaccttaaca
ttctctagacatgttcctcagcaaatatcagaaccagtacctaggtactcaacaagaagg
cagttggatatggaacaatgtagaactggtaatcctatagatgattgctggaggtgtgac
cctgaatgggaagccaaccggagaaagctagctgattgtgcggttgggttcgggaaaaat
gccattgggggtcgagatggtgatgtttatgtagtcacggattcaggtaatgatgatccc
ctaaatccaactccaggtacattacgtcatgcagttattcaaactgaacctctgtggatc
atctttgatcatgacatggtcataaacctaagagaacaactgctgatcaactcgtacaag
accatcgatggaagaggacacgacatccaaatcacaagtggaccgtgcataacgttacac
aatgtgagtaatgtaatcatacataacatctacatacataagtgcttaccgtcagggtat
gcaatggtgtgggacccgtttcctcacagtggatctgatggagatgggatctcgatattt
ggctcgcgggatgtgtggattgatcactgcacactagcaaattgttatgacgggctcatt
gatgccacgtatggttcaacatccataacaatctctaacaactatatgctacatcacaat
gaagtcatgcttatgggtcatagtgatgagttccttgatgacaagaacatgcaagtaaca
atagctttcaactactttggggaaggcctggttcagagaatgccgaggtgcaggcatgga
tattttcacattgttaacaatgtatacaccggttggcagatgtatgcaatcggaggaagt
gccaacccgacaatcaatagccaagggaatgtattcgtagcatcagatagcaattattca
aaggaggtgacgaaacgtgaaagctactttgatgagtggaagaactggaattggagatca
gaaggagatatgatgcttaatggtgcttttttcacaccttctggagaagaagcttcagaa
agctacataaaagcatcaagcatggtggcaagaccatcttcacttctaacaaagacagct
cagtttgctggttccctacgttgccgaaaaggctacggctgctaa
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