Gossypium arboreum (tree cotton): 128293048
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Entry
128293048 CDS
T05776
Name
(RefSeq) endoribonuclease Dicer homolog 2-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gab03036
]
128293048
Chromosome and associated proteins [BR:
gab03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
128293048
microRNA pathway
RISC loading complex
128293048
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GFIT
Other DBs
NCBI-GeneID:
128293048
NCBI-ProteinID:
XP_052884099
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Position
5:84788020..84796668
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AA seq
1395 aa
AA seq
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MEPVDMEEDISQLHPVDPLPFARSYQLEALEKAIKQNTITYLETGSGKTMIAIMLLRSYA
YLIRKPSPFFAVFLVPQVVLVKQQADAVEMHTDLNVGKYWGDMQVDFWDGEKWKQEIDKY
EVLVMTPQILLDGLRHSFFKINMIKVLIIDECHHARGKYPYASIMREFYHRPLEAGASNL
PRIFGMTASPINSKGANSADSYWQKIHELETIMNSKVYTCVSASVLAQFVPFATPKFKFY
QHTAIPNVLYAHLVEELAVLKVKHECSLDNLDLEASAAGSTRKKLSKIHSALIHCLHELG
VWLALKAAECFSCYESELLMWGKLDVFGEKIIRSYSVDAFRAIETCMPSGLDWTIANDVK
GSVAAGFLTTKVLCLIESLFEYRVLKDIRCIIFVERVITAVVLQSLFRELLPRYSNWKTK
YIAGNNSGLQNQTRKKQNEIVEEFRKGMVNIIVATSILEEGLDVQSCNLIIRFDPSPTIC
SFIQSRGRARMQNSDYLLMLKSGDFSTHSRLKNYLTSGDVMRKESLCHASYPCSPLSEGL
DDEEFYHVASTGACMTLSSSVGLMYFYCSRLPADGYFKPIPRCVIDKQMGLCTLLLPKSC
PIQTVCVQGDIKNIKKKACFEACKKLHQIGALTDNLVPDIVFEEHDVEEIEKEPYNDDQP
IFFPPELVNKGSLDSMTKYYCYLMELKQNFDYEVPVHNIMLLVRNQFDMDEKSVNIELEV
DRGTLTVNMKYIGLIRLNSDQVILCRRFQLAVFQVLMDRKAEKLAEVLCDHTLGNNSEID
YLLLPSNYVGQSPLIDWLSVTSVTFSYEKACKNHVNCNAGMIQIKSGLVCTCMIQNSLVS
TPHNGHAYIISGLLTNINANSLLRLSDGRLMTYKEYYEQRHGINLCYSQVSFLAGQHIFP
VQNHIQRCRKQKEKESSNALVELPPELCCVVMSPISISTFYSFTFLPSIMHRLESLLLAT
SLKKMHLDHCVQNVAIPTMKVLEAITTKKCLENFHLESLETLGDSFLKYAVCQQLFKKYQ
NHHEGLLSIRKEKIISNTALSMLGCDKKLPGFIRDEPFDPKDWMIPGYNCGSYSLNEETL
CKAKKIYVRGRRKLKFKKVADAVEALIGAYLSTGGEAAGLLFLDWIGISIDFTNIPYERH
FKVRAEKFVNVRHFESLLHYSFQDPSLLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYL
ITLHLYNKYPGITPRLLTDLRSASVNNNCYALSAVKAGFHKHILQSSQKLYKDIKETVES
FQELSLEYTFGWESEKSFPKVLADVMESLAGAIFVDSGYNKEIVFQSIRPLLEPMITLET
MTVQPVKELYELCQKEHYDLRKPIVSHEDGVSSITIEVEANGKVFKHTSTACDKEMAKKL
ASKEVLKSLKGANFS
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atggagccagttgacatggaggaggatatttctcaactacaccctgttgatccactccct
tttgccagaagctatcagcttgaagcattagagaaagctatcaagcagaacacaataact
tacttggaaactggatctggcaagacaatgatcgctatcatgcttctccgcagctatgcc
tatcttattcgcaagccctcaccttttttcgctgtcttcttggttccccaagttgtcctg
gttaaacaacaagctgatgctgtggaaatgcatacggacttgaatgttggaaagtattgg
ggagatatgcaggttgacttttgggatggggagaagtggaaacaagaaatagataaatat
gaggtgcttgtgatgacacctcagattttacttgatggattgaggcatagcttcttcaag
ataaacatgataaaggttttgataattgatgaatgccatcatgcccgaggaaagtaccct
tatgcctctattatgagagaattctatcatcgcccgttagaagctggtgcatctaatctt
cctaggatttttgggatgactgcttctcctataaattcaaaaggggcaaactctgctgat
agctattggcagaagatccatgaattggagactattatgaactcaaaggtgtatacgtgt
gtaagtgcatcagtgcttgctcagtttgttccatttgcgactccaaagttcaagttttac
caacatacggcaattccaaatgttttatatgcacacttggtagaggaattggctgttttg
aaagtaaagcatgaatgttcgttggataatttggatcttgaagcttctgcagcaggatct
acaagaaagaaactatcaaagatacattcagctttaatacattgtttacatgagcttggt
gtttggttggctctgaaggctgcagagtgcttttcatgctatgaaagtgagcttcttatg
tgggggaaattggatgtctttggagagaaaattattcggagctacagcgtggatgctttt
cgtgcaattgaaacatgcatgccatctggtctggattggaccatagctaatgatgttaaa
ggcagtgtggctgctgggtttcttaccacaaaagttttatgccttattgaatctttattc
gaatacagggtgttgaaggacataagatgtataatttttgttgagagggttataacagct
gttgtgcttcaatcgctattcagagaattgcttcccaggtacagtaattggaagactaag
tacattgcgggaaataactctggattgcagaatcagacaaggaaaaaacaaaatgaaatt
gtagaagaattccgcaaaggcatggttaacataatcgttgcaacttcaattcttgaagaa
ggcttggatgttcaatcatgcaacctaattatcagatttgatccttcaccaacaatttgt
agtttcatacagtctcgaggacgtgctagaatgcagaactcagattatctattaatgctg
aagagcggggatttttctacacattctcgactgaagaactatcttacaagtggagatgta
atgagaaaggaatctttatgccatgcatcatatccttgttctcctcttagtgagggctta
gatgatgaagagttttaccatgttgcgagtacaggggcatgtatgactcttagttctagt
gttggtctaatgtacttctattgctcacgtctccctgcagatgggtattttaaacctatt
ccgaggtgtgttatagacaagcaaatggggctttgcaccctccttctacccaagagttgc
cctatacaaactgtttgtgttcagggtgatataaaaaacataaagaaaaaagcatgcttt
gaagcatgcaagaaactccatcaaattggtgctttaacagacaatcttgttcctgatatt
gtttttgaagaacatgatgtggaagaaattgaaaaggagccctataatgatgatcaacct
attttctttccacctgaactagtgaataagggttcactggactccatgacaaagtactac
tgctacttaatggagttgaagcagaactttgattatgaggttcctgttcataacatcatg
cttcttgtcaggaatcagtttgacatggatgaaaaaagtgtgaatattgagttagaagtt
gacaggggcacattaacagttaacatgaaatatattggactaatacgtcttaattctgac
caggttatcttatgtagaaggtttcagcttgcagtttttcaagtacttatggatcgtaaa
gctgaaaagttggcagaggtgttatgtgaccataccttggggaataattctgaaattgat
tatctactcctcccatcaaattatgtgggccagagtcctctgattgattggttgtcagtt
acttctgtcacattttcttatgaaaaggcctgcaagaatcatgtgaactgcaatgctggt
atgatacagatcaaaagcggtctggtgtgcacttgcatgatccaaaattcgttggtctct
actcctcataatggtcatgcttatattatcagtggtcttttaactaatataaatgcaaat
tcacttttgaggttgagtgatggacgcttaatgacttacaaggagtattatgaacaacgc
cacggtatcaatttatgttatagtcaagtctctttccttgctgggcaacatatttttccc
gtgcagaatcacattcaaaggtgcagaaaacagaaagagaaagaatcaagtaacgcattg
gtagaattgcctcctgagctttgttgtgtagtaatgtctcccatatcgattagcacattt
tattctttcacatttcttccatcaatcatgcatcgactcgagtctttgctccttgcaacc
agcttgaaaaagatgcatttggatcattgcgtgcaaaatgttgccattccaactatgaag
gttttggaggcaattactaccaaaaagtgcctagaaaactttcatttggaatcactagag
actcttggtgactctttcttgaagtatgctgtttgtcaacagcttttcaaaaaatatcaa
aatcatcacgagggccttcttagtattaggaaggaaaaaattatttcaaatacagctctg
tccatgctaggatgtgacaagaaacttccggggtttatccgtgatgagcctttcgatccc
aaagattggatgattcctggttataattgtggaagttactcattaaatgaggaaacactg
tgtaaagcaaaaaaaatatatgttagagggagaagaaagctaaagtttaagaaggttgct
gatgctgttgaggcacttattggtgcttaccttagcacaggaggcgaagcagctggatta
ctatttttggattggatcggtataagtattgatttcacaaatataccatatgaaagacat
tttaaagttcgggccgagaagtttgttaatgtccggcactttgagtcccttctacactat
tcattccaagacccttctttgttggtggaagcattaacccatggttcttatatgcttgct
gaaattccaggatgttatcagcggttggaatttctaggggactccgttttagattatctt
attactctgcatttatataataaatatcctgggatcacgccaagattattaacggatctt
aggtcagcatctgttaacaacaattgctatgcattatcagctgtaaaggctggatttcat
aagcacattctccaaagttcacagaagctttacaaggatataaaagaaaccgtcgaaagt
tttcaggaattatcattggaatacactttcggctgggaatctgaaaaatctttccccaag
gtacttgctgacgtgatggagtcacttgctggagctatttttgttgattcaggatacaat
aaggaaatcgtattccagagtataaggccactgttggagcccatgattactctggagact
atgacggttcaacctgtcaaagagctatatgagctctgtcaaaaggagcattatgaccta
agaaaacccattgtttcacatgaggatggcgtttcttctattacgatagaggttgaagca
aatgggaaggtattcaagcacacatccacagcttgtgataaggagatggccaagaaactg
gcttccaaagaagttttgaagtctctaaagggagccaattttagctag
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