Glycocaulis abyssi: AB6B38_02790
Help
Entry
AB6B38_02790 CDS
T10778
Name
(GenBank) autotransporter domain-containing protein
Organism
gaby Glycocaulis abyssi
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Autotransporter
PATR
Motif
Other DBs
NCBI-ProteinID:
XER17852
LinkDB
All DBs
Position
546145..552087
Genome browser
AA seq
1980 aa
AA seq
DB search
MLAGAGALAALMPQQALAQFLISGGAHEIVDGDGIGAGTPPATQISVWNTGNLYIGFLSN
GTLTVRNGGRVGSATGWLGFDFGDAGNVTVTGADSEWINSGDLFVGYFGNGTLTISDGGR
VENTTGRIGFEFGATGDVTVTGDGSEWVNSDVLTVGDDDNGTLIISDGGRVSTTSLTIGA
NAAGTGTLSFGAAAGDAAVAAGTLDTPTIAFGPGTGTIVFNHTDNDFELDADISGAGTIR
LLSGRTILSGNSSYTGDTLLEVGTLTLASDNALGSSTLRTTGSVVDYADGVDISNAIVID
SNTTQFQVLTGSATQSGVISENNGPRPFEKIGDGELVLTAANTWTGDTTITGGTLTFDGG
SVSLAANRYFYIGRQNGDDSTLNILNGGSVSSQFAYIGDDAGSAGLVTVSGAGSLMMNSA
ETTVGRSGTGTLNIEDGGEVSSTRSWIGRFAGSNGTASVTGTDSLWTHSVYLVVGTAGDG
DLTISDGGSVEVADQGVWIGEMAGSIGAITVTGADSSLVNTGTALRVGNAGFGTLTISDD
AGVTNTDGYIGVGAGSTGEVTVTGANSSWTNSNHVYVGYSGDGTLNIENGGHVSGVEGWI
GRFAGSSGIVTVTGADSRWTSSSRIYPGIEGDGTLIIADGGEVVSAGGTLGFFAAGTGNT
TVTGPDSRWTNTDGLTVGANGTGILTIADGGSVSNTVGVIGSGATSNGSAIVTGADSIWI
NSSELRVGSSGDGTLTIADGGVVNSNGGLVGADAGSSGTATVTGANSTWNTGSLRVGRFG
DGTLTISNGGTLTSVNAIVAAQAGSSGSVTVTGSGSSWTSTNYLDVGDFDTGYLTIADGG
TVTSATGRLGYYSDGDGHVTVTGADSSWSMTGLLSVGRIGAGALTIADGGEVSNAIGYIG
EQAGSTGAAAVTGAGSSWINSDLYIGNSGEGTLTLSDDGEVSADEVIIANNAGSTGTVYI
GSDGVAPSGAGILNTPSVTFGAGTGALVFNHTNCCGLFFDADISSDPLGQAFILHAEGLT
HLTGNSAGFAGDVIVGGGALSVDGTLGSGDVALGVDGSGFLTGSGTIGGDVLVSGGTLLG
TSGATLTITGDLELDAGSFVIAALGAPGDGELFAVGGDLTLDGTLDVIDMGGFGPGLYGL
FTYGGSLTDNGLALGSAPVADLLPGELTIQTSVAGEVNLVSNIGVDLLFWDGDDPANALN
GLIDGGDGVWSANSFTFTDADGLVSGPSRPTPGFIVFSAAAGNVTVDDSDGEIEIAGAQF
AVDGYVIDGDGITLAGNGDGDAIFRVGNGTGAGAAFTATIGSDLVGDAALVKTDLGTLIL
TGHNSYTGGTEVRSGTLIGSTASIMGDIANDGVVVFDQAGDAALDQALSGNGLVRFTGGA
EFTLGSGNSYAGGTQVFGSQLVLTAGDSAGTGAITLNNSNTAYGDGITVSNTLTFSGTNE
LQVRSGTATHAGHVTGGGDLGLTGAGTLIFTGNGSAFTGNTIITGNVLMNGTLGGTIEVA
DGGMLRGFGTLGSTTALAGSTIAPGNSVGTLTIDGDLVFEDGSLYEVTVAADGSADLIAV
SGAATISPGAVITVGSASGISVGAPTVVLSAAGGVTGSFQFGDMITGLPFITSAVETDGD
DVTLFFGRNETPFASFAAGGNAASVAQAADTLGSGNPLWQALVWLDAASAPLAFEALNGE
IHATHRQLVLDETIHTRRAVTSRLAAARSEETGSAWISGHFGGAQLGSRDGASRVSADTS
GVMLGLDTPVNGDVRIGVMAAFGETAFNITGRSAAGLAESRSLGVYGGGQFGGFGLSAGA
IYGWHDLSTNRLVSFPGINEHINSSHSADSVQVFGEASLAGPAGFEPFLSLAHVRLDTGR
FAEAGGVSALALDGETRQMTQGRLGSRFAHDWQAGDTALRFEGSLGWRRVFSGHRQFVSG
NLAGAPVFFEGNGVDRDAAAIEAGMVIEPLGGISLELGYAGEIGSNARNHGAEFRARWAF
NT seq
5943 nt
NT seq
+upstream
nt +downstream
nt
atgctggccggtgcaggcgcgctggcagcgctcatgccgcagcaagcgctggctcagttt
cttattagcggtggtgcgcacgaaattgtggacggcgacggcatcggtgcgggcacgcct
cccgccactcagatcagcgtctggaataccggcaatctctatattgggtttttgagcaac
ggcacgttaacggtgcgcaatggcgggcgggtcgggagcgcgaccggatggcttggattt
gattttggtgacgctggcaatgtcaccgtcaccggcgcggattcggagtggatcaattca
ggtgatctttttgtcggctatttcggcaatggcacgctgacgatttccgatggcgggcgg
gtggagaacacgaccggaaggattggatttgagtttggtgccactggcgatgttaccgtc
accggcgacgggtcggagtgggtcaactctgacgttctgaccgtcggcgatgacgacaat
ggcacgctaatcatctctgatggcggcagggtcagcacaaccagcttgacgattggcgcc
aatgccgccggcaccggcacgctcagtttcggcgcggcggcgggcgatgcggccgtagcg
gcgggcacgctcgacacccccaccatcgcgttcggcccgggcaccggaaccatcgtcttc
aaccacaccgataatgatttcgagctcgatgccgacatttccggtgctggcacgatccgg
cttctgtccgggcgcaccattctttcgggcaatagcagctataccggcgacacgctgctg
gaagtcggaacgctgacgctggccagcgacaatgcgctgggcagctcgacgctccgcacg
accggctctgtggtggattatgcggacggggtggacatctcgaacgccatcgtcatcgac
tccaataccactcagttccaggtgctgaccggctcagccacgcagtcgggcgtgatctcg
gaaaacaacggcccgcgcccgtttgagaagatcggcgacggtgagctggtcctgacggcg
gccaatacctggaccggcgacacgaccatcaccggtggcacactgacctttgatgggggg
tcggtaagtctggcggcgaacaggtatttttatatcggccgccagaatggtgatgactct
acgctcaatatcctcaatggcggttcggtcagcagccagtttgcctatatcggtgatgac
gccggttcagcgggcctggtaaccgtgtccggtgccggtagcctgatgatgaacagcgcc
gaaacgacggtcgggagaagcggtaccggcacgctcaacatcgaagatggcggtgaggta
agcagcacgcgctcgtggattggccggtttgccggatcaaatggtactgccagtgtgacg
ggcacggacagcctgtggacgcattcagtctatcttgtagtgggcaccgcgggcgatggc
gatctcaccatttctgacggcggcagtgtcgaggtggccgaccagggcgtctggatcgga
gagatggccggctcgattggtgccataaccgttaccggcgcagactccagcctggtcaat
accggaacggccctgcgcgtgggtaatgctggctttggcaccctgaccatctccgatgac
gccggagtgacaaataccgacggctatatcggcgttggtgccggctctacgggcgaagtg
acggtcacgggggcgaatagtagctggaccaactccaatcacgtctatgttggctattcc
ggcgatggaacgctcaacatcgagaatggcgggcatgtttccggcgttgaaggctggatc
gggcgatttgccggctcaagcggcattgtgaccgtcaccggcgcggatagccggtggacc
agttccagccgtatctatccgggtattgaaggcgatggaacgctgataatcgccgatggc
ggtgaggttgtcagtgccggtggcactctcggcttttttgctgctggaactggcaataca
accgtcacaggcccagatagccggtggacgaacactgacggcctgactgtaggggctaac
ggcaccggcatactgaccatcgccgatgggggctcggtcagtaatacggtcggcgtcatt
ggcagtggtgcaaccagcaatggttcggccattgtcaccggcgcagatagcatatggatc
aattcatccgagctgcgcgtcggcagtagcggcgatggcacgctgaccattgcggatggc
ggtgtggtcaacagcaatggcggcctcgtgggagccgatgccggatccagcgggacagca
accgttaccggggcgaacagcacatggaataccggctctttgcgtgtcggccggtttggc
gacggtacgctgaccatttccaatggcggcacgctgaccagcgtgaacgccattgtggca
gcgcaggcagggtcgagcggcagcgtgaccgtgacgggcagcggcagtagctggacctca
accaactatctggatgtgggtgatttcgataccggatatctgaccattgccgatggcgga
acggtcaccagcgcgacggggcggcttggctattattcagacggcgacgggcatgtgacc
gtcaccggcgcggacagcagctggagcatgaccggcctgctgagcgtcgggcggattggc
gcaggcgcgctgacgattgctgatggcggcgaggtcagcaatgccatcggctatatcggt
gaacaggccggctccacgggagccgcggccgtcacgggcgcagggtcgagctggatcaat
agcgatctgtacatcgggaactccggcgaaggcacgctgaccctttccgatgatggcgag
gtgagcgccgatgaggtgataatcgcaaacaacgcaggctcgactggcactgtgtatata
ggctctgatggcgttgcgccgtctggcgcgggcattctcaataccccgtcggtgaccttc
ggtgccgggaccggggcgctggtgttcaatcacaccaattgctgcgggctgttttttgac
gccgatatctccagcgatccgctcggccaggcctttatccttcacgccgaggggctgacc
catctgaccggtaacagcgccggatttgcaggcgacgtcattgtcggtggtggtgcgctg
tcggtcgatggcacgctgggctcgggcgatgtggcactgggcgtggatgggtcgggcttc
ctgacaggcagcggcacgattggcggggatgttctggtcagtggcggcacgcttcttggc
acatcgggcgccacgctcaccattaccggtgatctggaactggacgccggttcgttcgtg
atcgcggcgctcggcgcaccgggcgatggcgagctgttcgccgtcggcggcgatctgacg
ctggacggcacgctggacgtgatcgacatgggaggctttggccccggtctctacgggctt
ttcacttatggcggatcgttgaccgataacgggctggcgctgggctcagcgccggtggca
gaccttctgccgggcgagctgacgatccagacaagcgtggcgggcgaggtgaacctggtc
tccaatattggcgtcgacctgctgttctgggacggcgatgatcctgccaatgcactcaat
ggcctgatcgatggcggggacggtgtgtggagcgccaattccttcaccttcaccgatgcc
gacgggctcgtctctggtccctcccggccgacgcccggcttcatcgtgttctccgccgcc
gccggcaatgtcacggtcgatgatagtgacggtgagatcgaaatcgcgggcgcgcagttc
gcggtcgatggctatgtcatcgatggcgatggcataacgcttgctggcaatggcgatggc
gacgcgatcttccgcgtcggtaacggcactggcgcgggcgcagccttcaccgccaccatt
ggctcggaccttgtcggcgatgcggctctggtcaagaccgatctcggcaccctcatcctg
accggccataacagctataccggcggaaccgaggtgcgcagcggcacgctcatcggctca
accgcttcgatcatgggcgatatcgccaatgatggcgtggtggtgttcgatcaggcgggg
gatgccgcgctggatcaggcactgtccggcaatggcctcgtccgctttaccggtggagcc
gagttcacccttggctctggcaacagttatgccggcggcacccaggtcttcggctcgcag
ctcgtgctgacggccggcgacagcgcgggcacgggcgcgatcacgctcaataactccaat
accgcttatggtgacggcatcaccgtttccaacaccctgaccttctccggcacgaacgaa
ctgcaggtgcggtcaggcacggccacccatgcaggccatgtgaccggcgggggcgatctg
ggtctcaccggggcgggtacgctcatcttcacgggcaatggttcggcctttacaggcaac
accatcatcaccggcaatgtgctgatgaacggcacgctggggggcacgatcgaggtggcc
gatggcggcatgttacgcggctttggcacgctgggttcgaccacggccctggcgggctcg
accatcgcgccgggcaattcggttggcacgctcaccattgacggtgatctcgtgtttgag
gacggctcgctttacgaggtgacggttgcagccgatggaagcgctgacctgatcgccgtc
agcggtgcggccactatcagtcccggcgcggttatcacggtcgggtcggcatcgggaata
tccgtcggtgctccgacagtcgtgttgtccgccgctggcggcgtaaccggatcattccag
ttcggtgacatgattaccggcctgccgttcatcaccagtgcggtggagacagacggcgac
gatgttacgctgttcttcggacgcaatgaaacgccctttgcttcgttcgccgccggcggg
aatgcggcgtcggtggcgcaggccgccgatacgctcggctcaggcaatccgctctggcag
gcgcttgtgtggctcgacgcagcctctgctccgctcgccttcgaagcgctcaatggcgag
atacatgccacgcaccgccagctggtgctggatgagaccatccatacccgccgggccgtc
acctcgcggctggctgctgcccgtagcgaagagaccgggtcagcatggatcagcgggcat
ttcggcggcgcgcagcttggcagccgcgatggcgcatcgcgcgtttcggctgacacgtcc
ggcgtgatgctgggtctggatacgccggttaacggggatgtccgtatcggcgtcatggct
gcctttggcgaaaccgcgttcaacatcaccgggcgcagcgcggctggcctggctgaaagc
cgttcgctgggcgtctatggtggcggccagttcggcggctttggcctcagcgcaggcgcg
atctatggctggcatgatctgtccaccaaccgcctggtcagcttccccggcatcaacgag
cacataaactccagccacagtgctgacagcgtgcaggtgttcggcgaagccagccttgcc
gggccggccggttttgagcccttcctctcacttgctcatgtccgccttgataccggaaga
tttgccgaggcgggcggtgtttccgcgctcgcccttgacggcgaaacccgccagatgacg
caaggtaggcttggcagccgctttgcccatgactggcaggcaggtgatacggcgcttcgt
tttgagggctcgcttggctggcggcgcgtgttcagcggacatcgccagttcgtctccggc
aatctggctggcgctccggtcttctttgaaggcaatggcgttgaccgcgatgcggcggcc
attgaggcgggcatggtgatcgagccgcttggcgggatcagcctggagctgggctatgcg
ggcgagatcggctccaacgcccgcaatcacggcgccgagttccgcgcacggtgggcgttc
taa
DBGET
integrated database retrieval system
