Glycocaulis abyssi: AB6B38_03370
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Entry
AB6B38_03370 CDS
T10778
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
gaby Glycocaulis abyssi
Pathway
gaby03410
Base excision repair
gaby03430
Mismatch repair
gaby03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gaby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AB6B38_03370 (recJ)
03430 Mismatch repair
AB6B38_03370 (recJ)
03440 Homologous recombination
AB6B38_03370 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gaby03400
]
AB6B38_03370 (recJ)
DNA repair and recombination proteins [BR:
gaby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AB6B38_03370 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AB6B38_03370 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AB6B38_03370 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
XER17958
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Position
671444..673219
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AA seq
591 aa
AA seq
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MAGREPLFGVTASVTGRAWALSDAPDEVVAAIVRATGCNDALARLMASRGIGVDDAPGFL
SPRLRDSFPDPSSFLGMDAAARAVWDAVEAGTRIAIFADYDVDGASSGAQLVRWLRAVGQ
EALTYVPDRIEEGYGPSAEAFTSLKAAGAGLVVTVDCGAAAHGALESAAGMGLPVVVIDH
HLMDGPPPPALALVNPNQPGDISGCGHMAAAGVTLVFLAALNREGRARGAFKGQEPDILA
MTDLAALGTICDVVPLTGPNRAIVTQGLKVMSGWQKAGLAALADVSGLTGPASPYYAGFL
LGPRINAGGRVGVAGLGLELLGSDDAARVREIALELDRLNAERKAIEDGVLTAALDEIES
GRIDASGPVIVLAGEGWHPGVIGIAAGRIKDQFNRPTIVIGVENGIGKGSGRSCPGVHLG
NAIMAARDAGLLEKGGGHAMAAGLTVEAARIGAFRDFLAERLAPEWAAADEARTLRLDGV
VHPAAVDFDFGESLKQAAPFGVGNPEPRFALSDLHIRFVKEVGTGHLRFTFEADTGAQVS
GIAFRALGKPLGDALTTGRDQRWHVAGRIKAEDNRFGRKAELHLEDMAPAV
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggctggccgcgaaccgctctttggcgtcaccgcatcggtaacaggacgcgcctgggcg
ctcagtgacgcaccagatgaggtggtggcagcgattgtgcgcgccacagggtgtaatgac
gcgctggcgcgcctgatggcgtcgcggggtatcggcgttgacgatgcgcccggcttcctg
tctccacgcctgcgtgacagctttcccgatccgtcgagctttctgggcatggacgccgca
gcgcgcgccgtctgggacgccgtggaggctggcacgcgcatcgccatctttgccgattat
gatgtcgatggggcgagctctggcgcgcagctggtacgctggctgcgggcggtggggcag
gaggcgctgacctatgtgcccgaccgcatcgaggaaggctacggcccctctgccgaagcc
ttcaccagcctgaaggcggcaggggcggggctggtcgtgacggtcgattgcggcgcggcg
gcgcatggcgcgctggaaagcgccgctggcatgggcctgccggtcgtggtgatcgaccac
catctgatggacgggccaccgccgcccgcgctggcgctcgtcaatcccaaccagcccggc
gacatatcgggctgcgggcatatggcggcggcaggcgtgacgctggtttttctggcggcg
ttgaaccgcgaaggacgggccaggggcgccttcaagggtcaggaacccgatatcctcgcc
atgaccgatctggcggcgctggggacgatctgcgatgtcgtgccactgaccggaccaaac
cgcgccatcgtcacgcagggcctgaaggtgatgagcggctggcagaaggccgggctggcg
gcgctggcagacgtttccggcctgacaggaccggccagcccctattatgcaggcttcctg
ctggggccgcgcatcaatgccggtggccgcgtgggcgtggcgggcctcggactggaactg
ctcgggagtgatgatgccgcgcgcgtgcgcgaaattgcgctggagctggaccggctgaat
gccgaacgcaaggccattgaggacggtgtgctgacggctgcgctggacgagattgagtcc
gggcgcatcgacgctagcggcccggtaatcgtgctggccggggaggggtggcatcccggc
gtgatcggcatcgcggccgggcgcatcaaggaccagttcaaccggccgaccatcgtgatc
ggcgtggagaacggcatcggcaagggatcaggacggtcctgccccggcgtgcatctgggc
aatgcgataatggcggcgcgcgacgccgggctgctggaaaaagggggcgggcacgccatg
gcggcgggtctgacggtcgaggccgcccggatcggcgcattccgggacttcctcgccgag
cggctcgcgccggaatgggccgcagccgatgaggcccgcaccttgcgccttgatggcgtg
gtccacccggccgcggtggattttgattttggcgagtcgctcaagcaggcggcgcccttc
ggcgtgggcaatcccgaaccgcgctttgccctgtcggatctgcatatccgcttcgtgaag
gaggtggggaccggccatctgcgcttcaccttcgaggccgataccggcgcgcaggtgtca
ggcatagcgttccgggcgcttggaaagccgctgggcgacgcgctgacaaccggacgtgac
caaagatggcatgtcgcagggcgcatcaaggccgaagataatcgcttcggacgcaaggca
gagctgcatctggaagatatggcaccggccgtttga
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