Glycocaulis abyssi: AB6B38_03510
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Entry
AB6B38_03510 CDS
T10778
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gaby Glycocaulis abyssi
Pathway
gaby03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gaby00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB6B38_03510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaby03019
]
AB6B38_03510
Messenger RNA biogenesis [BR:
gaby03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB6B38_03510
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF1932
Motif
Other DBs
NCBI-ProteinID:
XER18677
LinkDB
All DBs
Position
699346..700959
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AA seq
537 aa
AA seq
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MNLNLYGFGPEEDRKWIIVDCGVTFGDLTTPGVDVIMPDPRFIEERKHQLLGIVLTHAHE
DHMGAVAYLWERLRCPIWATPFTAYLMRDRLAERGLSNEAKVREISLTGRFDIGPFDLEL
ITLTHSIPEPNGLAIRTPAGLILHTGDWKIDPEPLIGAPTDPEAIKALGREGILAMVCDS
TNVFTPGEAGSEAGVRESLTKVIAEQKGKVAIAAFASNVARLETAILAAEANGRRVCLVG
RSMHRMAGAAKSVGLLQSCAPFVEEEEAGYFPSDKIAFVCTGSQGEPRAALSRIADRSHR
NVTLTDGDTVIFSSRVIPGNERSIYDLMNRLALRGVKIITERDRHIHVSGHPCRDELKQM
YEWAKPKVAIPVHGEARHLIEHAAYAKQLGVPSAVIPANGSLIAINADGARIIDEAPAGR
LHLDGNFIVDAEASSMRERRKMAYGGAISVAMAVSGKGEIVSGPDLRALGVPDTGGDDMD
EFLDALADAAERAFAKMGNKARRDEDEVEEVVRQAVRREANRLWGKKPIVEAMVLMV
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgaacctctacggcttcgggccggaagaggaccgcaaatggatcatcgttgat
tgcggggtgacattcggtgatctgacgacgcccggcgttgacgtcatcatgcccgacccg
cgcttcatcgaagagcgcaagcaccagcttctcggtatcgtgctgacccacgcccacgaa
gaccatatgggcgcggtggcctatctgtgggagcggctacgctgccccatctgggctacg
ccctttaccgcctatctgatgcgtgaccggctggccgagcgtggcctgtcgaatgaagcc
aaggtgcgcgagatttcgctgaccggccggttcgatatcggcccgttcgaccttgaactc
atcacgctgacccactccatccctgagccgaacggtctagccatccgcacacctgcgggt
ctgatcctgcacaccggcgactggaagatcgatcccgaacccctgatcggcgcgccaacc
gatcccgaagccatcaaggcgctgggccgtgagggcattctggccatggtgtgtgacagc
accaatgtgttcacgccaggcgaagcgggctctgaagccggcgtacgcgaaagcctgacc
aaggtcatcgccgagcagaagggcaaggtggcgattgctgccttcgcctccaacgtcgca
cgccttgaaacggctatcctggcggctgaggccaatggccggcgcgtctgcctggttggc
cgctccatgcaccgcatggcgggtgcggcgaagtctgtggggctgttgcagtcctgcgcg
cccttcgtcgaagaggaagaggctggctatttccctagcgacaagatcgcctttgtctgc
accggatcacaaggcgagccgcgagccgcgctctcgcgtatcgctgaccgttcgcaccgc
aatgtgaccctcaccgacggcgatacggtcatcttttcctcgcgcgtgatccccggcaat
gagcgcagtatctatgatctgatgaacaggctggccctgcgcggcgtgaagatcatcacc
gagcgcgaccggcatatccacgtctccggccatccctgccgcgatgagctcaagcagatg
tatgaatgggcgaagccgaaagtggcgatccccgtgcatggcgaggcgcgccatctgatc
gaacacgcggcctacgccaagcagcttggcgtgccctccgccgtcattccggcgaatggc
agcctgattgccatcaatgcggacggcgcgcgcattatcgatgaggcaccggcaggccgc
ctgcatctcgatggcaatttcatcgtggatgccgaggcgagctccatgcgcgaacggcgc
aaaatggcctatggcggcgcgatcagcgtggcgatggctgtctccggcaagggcgagatc
gtgtccggtccggacctgcgggcgctgggcgtacccgacacgggcggtgatgatatggat
gaattcctcgacgctctggccgatgccgccgagcgtgcctttgccaaaatgggtaacaag
gcgcgccgcgacgaggacgaggtggaggaagtggtgagacaggccgtgcgccgcgaggcc
aaccggctctggggcaagaagcccatcgtcgaagccatggtattgatggtctag
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