Glycocaulis abyssi: AB6B38_05180
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Entry
AB6B38_05180 CDS
T10778
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
gaby Glycocaulis abyssi
Brite
KEGG Orthology (KO) [BR:
gaby00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gaby03032
]
AB6B38_05180 (topA)
03400 DNA repair and recombination proteins [BR:
gaby03400
]
AB6B38_05180 (topA)
Enzymes [BR:
gaby01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AB6B38_05180 (topA)
DNA replication proteins [BR:
gaby03032
]
Prokaryotic type
DNA Topoisomerases
AB6B38_05180 (topA)
DNA repair and recombination proteins [BR:
gaby03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AB6B38_05180 (topA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
TPR_26
Motif
Other DBs
NCBI-ProteinID:
XER18302
LinkDB
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Position
1048984..1051581
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AA seq
865 aa
AA seq
DB search
MTVVVVESPAKAKTINKYLGKDFVVLASFGHVRDLPAKDGSVRPDEDFAMEWEIDSRSAP
KVKAIADALKDHDTLVLATDPDREGEAISWHLLEALTKRRALKDKTVKRVAFNAITKSAV
QDALAHPRDVDMELVEAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLITER
EGEIERFTPQEYWSIEADVRADGSDAFRARLSQFDGKKITRLSIGDEQTARAAEAAVKAA
SFTVAAVEAKPTKRNPPAPFTTSTLQQEASRKLGFDAQRTMRVAQRLYEGIDIGGETTGL
ITYMRTDGVSMDGSAIHQARKAIGERYGEEYVPDVPRAYSSKAKNAQEAHEAIRPTSFLR
HPSSLRLEADQARLYELIWKRAVASQMESARLERTTIDLEADGGKLALRATGSVVTFDGF
FALYREGLDDDADEDGEARLPAVKQGASAKADQTFTEQHFTQPPPRYTEATLVKKMEELG
IGRPSTYASVLSVLRDRDYVRMEDKRFVPEDKGRVVIAFLENFFTRYVEYDFTADLEDQL
DKVSAGEMPYKELLRQFWEHFSANVEGIADLRVGQVIDAMNIALAPLIFPAREDGKDARL
CPSCNVGTLSLRLGKHGAFVGCSNYPDCRFTRPLGGNGEGQSAIEGDGEIGLHPEHGQMI
YLKDGRFGPYLEMKLEGEDKPRRSSLPKGWDPASINLEKAVMLIDLPRQVGPHPDDGEMI
EAGLGRYGPFVKHGKTYANLPSIDEVFEIGINRAVTLIEDKRANGGRGRASAEPLKELGE
HPDGGPIQVMAGRYGPYVKWAKVNATLPKDVTPETVTLEQAVELINAKAGSAKSKRKAPA
KKKTAAAKKPATKKKTATKAKAGSK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcgtcgtcgttgagtcgcctgccaaggccaagaccatcaacaaatatctgggc
aaggatttcgtcgtcctggccagtttcggccatgtgcgtgacctgcccgccaaggacggc
tcggtgcggcccgatgaagacttcgcgatggagtgggagatcgattcccggtcggccccc
aaggtgaaggccatcgccgacgccctcaaagatcacgacacgctggttctggccactgac
ccggatcgcgagggtgaagccatctcctggcatttgctcgaagcgctgaccaagcggcgg
gcgctgaaagacaagacggtcaagcgcgtcgccttcaacgccatcaccaagagcgccgtg
caggatgccctcgcccatccgcgtgatgtggatatggagctggtggaagcctatcttgcc
cgccgcgcgctcgactatctggtcggctttacgctctcgccggtgctgtggcgcaagctg
cccggcgcgcgctctgcaggccgcgtccagtcggtggcgctgcgcctgattaccgagcgc
gaaggcgagatcgaacgcttcacaccgcaggaatactggtccatcgaggctgatgtccgc
gccgatggctccgatgcgttccgcgcgcgcctctcccagtttgacggcaagaagatcacg
cgtctgagcattggcgatgaacagactgcgcgcgccgccgaggcggcggtaaaggcggcg
agctttacggttgcggcggtcgaagccaagcccacaaagcgcaacccgcccgcccccttc
accacctccaccctgcagcaggaagcctcgcgcaagctgggctttgacgcccagcgcacc
atgcgcgtcgcccaacgcctgtatgaaggtatcgatattggcggcgagaccaccggcctc
atcacctatatgcgtaccgacggcgtttcgatggatggcagtgccatccatcaggcccgc
aaggccattggcgagcgctatggcgaggaatacgtgccggacgtgccgcgcgcctattcc
tccaaggccaagaacgcgcaggaagcccacgaggcgatccgcccgaccagcttcctgcgt
catccctcctcgctgcgtctggaagccgatcaggcccgtctctacgagctgatctggaag
cgcgccgtcgccagtcagatggaaagcgcgcggctggagcgcaccacgatcgatctggaa
gccgacggaggcaagctggccctgcgcgccaccggctctgtggtcacgtttgacggcttc
tttgcgctctatcgcgagggcctcgacgatgatgccgacgaggacggcgaagcacgcctg
cctgcggtgaaacagggcgcctctgccaaggccgatcagaccttcaccgagcagcacttc
acccagccgccgccgcgctataccgaggcgacgctggtcaagaaaatggaagagctgggc
attggccggccctccacctacgcctccgtcctctcggtgctgcgcgaccgcgattatgtg
cgcatggaagacaagcgcttcgtccccgaagacaagggccgggtcgtcatcgccttcctg
gaaaacttcttcacccgatacgtcgagtacgacttcacggcggatttggaagaccagctc
gacaaggtgtccgccggcgagatgccctacaaggagctgctgcgccagttctgggaacat
ttctcggccaatgtcgaaggcattgcggacctacgcgtcggtcaggtgatcgatgcgatg
aatatcgcgctggccccgctgatcttcccggctcgcgaggacggcaaggatgcgcggctc
tgcccgtcctgtaatgtcggcacgctgtcgctgcggctcggcaagcatggcgcatttgtg
ggctgctccaactatcctgactgccgcttcacccgcccgctggggggcaatggcgagggg
caatcggcgatcgagggtgacggcgagatcggcctgcatcccgaacacggccagatgatc
tatctcaaagacgggcgcttcggaccctatctggagatgaagctggagggcgaagacaag
ccgcgccgctcctccctgcccaagggctgggatccggcttccatcaatctggaaaaggcg
gtcatgctgatcgacctgccgcgccaggtcggcccgcacccggatgatggcgagatgatc
gaggccgggcttggccgctatggccccttcgtcaagcacggtaagacctacgccaacctg
ccttccatcgatgaggttttcgagatcggcatcaaccgcgccgtcactctgatcgaggac
aaaagggccaatggcgggcgcggacgcgccagcgccgaaccgctaaaagagctgggtgaa
caccctgatggcggccccatacaggtcatggccgggcgctatggcccgtatgtgaaatgg
gccaaagtcaacgccaccctgcccaaggatgtgacgccagagaccgtgacgctggaacag
gcagtggaactgatcaacgccaaggccggttctgccaaaagcaagcgcaaggcgccggcg
aagaagaagaccgcagcggccaaaaagccggccacgaaaaagaaaaccgccacgaaggcg
aaagcaggaagcaagtga
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