Glycocaulis abyssi: AB6B38_07315
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Entry
AB6B38_07315 CDS
T10778
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gaby Glycocaulis abyssi
Pathway
gaby03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gaby00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB6B38_07315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaby03019
]
AB6B38_07315
Enzymes [BR:
gaby01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AB6B38_07315
Messenger RNA biogenesis [BR:
gaby03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AB6B38_07315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
Utp25_C
Helicase_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XER16056
LinkDB
All DBs
Position
complement(1497581..1498879)
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AA seq
432 aa
AA seq
DB search
MTKFTELGLAAPVERAVVDEGYETPTPIQVRAIPPLLQGKDVVGIAQTGTGKTAAFVLPI
LTRLLAEKKQAPGLSCRCLILAPTRELAAQIGDSIAVYGRHTGLTHAVVFGGVKHGPQVR
ALARGLDILVATPGRLLDHAADRKARLDLTSLVVLDEADQMLDLGFMPALRKILHMVGKP
RQTVMFSATMPPPIRALADDFLRDPVTVAVTPQSRPVERIEQAVLYVGTAEKRQALIDLM
APEAKKSTIIFTRTKRGADKVAKFLAEYGHKAAAIHGNKSQNQREKALAAFKAGEMRVLV
ATDIAARGLDIDGVELVVNFELPNVPESYVHRIGRTARAGAQGRAVALVAPDERGLLQDI
EKLTGLRIKGLNDAPPISGPTRPVQPQRGQRRGGQGGNRQGGQQNNAGGGQKRSRNRRRK
PGGGQGGQRQSA
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgactaagtttactgagctgggcctcgcggctccggtcgagcgtgcagtcgtggatgaa
ggctatgagacgccgacaccgattcaggtgcgcgccattccgccgctcctgcagggcaag
gatgttgtcggcatcgcccagaccggcaccggcaagacggccgccttcgtgctgccgatc
ctgacccgcttgctggcggagaagaaacaggctcccggcctgtcctgccgctgccttatc
ctcgcaccaacgcgtgagctggccgcccagattggcgattccattgccgtttatggccgc
catacgggcctcacccatgcggtcgtgttcggcggtgttaagcacggaccccaggtgcgc
gcgctcgcgcgcggcctcgacattctggtggccacgcccggccgtctgctcgaccatgcg
gccgaccgcaaggcgcgccttgacctcacctcgctcgtcgttctggacgaagccgaccag
atgcttgatctcggcttcatgccggcgcttcgcaaaatcctgcacatggtgggcaagccg
cgccagacggtgatgttctccgccaccatgccgccgcccatccgggcgctggccgatgat
ttcctgcgcgatccggtgacggtggcggtaaccccgcaatcgcgcccggtggagcgcatc
gagcaggccgtgctctatgtcggcacggctgaaaaacgtcaggcgctcatcgacctgatg
gcacctgaggcgaagaaaagcaccatcatcttcacccgcaccaagcgcggcgccgacaag
gtggcgaagtttctggccgagtatggccacaaggccgccgccattcacggcaataaaagc
cagaaccagcgcgagaaggcgctggccgcgttcaaggccggcgagatgcgcgtgctggtg
gcgaccgatatcgccgcgcgcgggctcgacattgatggtgtggagctggtggtgaatttc
gaactgcccaacgtcccggaatcctatgtgcaccgcattggccgtacggcgcgcgccggc
gcgcaaggccgggccgtggctctggttgcgccggacgagcgcggcctgttgcaggatatc
gagaagctgaccggactgcggatcaaggggcttaatgacgctccgccaatctccggtccg
acacggcctgtgcaaccgcagcgtggccagcgccgtggtggtcagggcggcaatcgccag
ggcggccagcagaacaatgccggtggcggtcagaagcgttcgcgtaaccgccggcgcaag
cccggcggcgggcagggcggtcagcgccagagtgcgtga
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