Glycocaulis abyssi: AB6B38_10640
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Entry
AB6B38_10640 CDS
T10778
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gaby Glycocaulis abyssi
Pathway
gaby03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gaby00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB6B38_10640 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaby03019
]
AB6B38_10640 (pnp)
03016 Transfer RNA biogenesis [BR:
gaby03016
]
AB6B38_10640 (pnp)
Enzymes [BR:
gaby01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AB6B38_10640 (pnp)
Messenger RNA biogenesis [BR:
gaby03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AB6B38_10640 (pnp)
Transfer RNA biogenesis [BR:
gaby03016
]
Prokaryotic type
tRNA degradation factors
AB6B38_10640 (pnp)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
XER16682
LinkDB
All DBs
Position
complement(2197046..2199175)
Genome browser
AA seq
709 aa
AA seq
DB search
MFNIQKETIDWAGRQLTIETGRMARQATGSVLVTYGETSVLATAVAMKQVKEGMDFFPLT
VNYQEKYFAAGKIPGGFFKREGRPTDKETLTSRLIDRPIRPLFPKGFKNDTQVMLTVLSH
DMENDPDIVAMVGASAALVLSGLPFLGPIGAARVGYKDGGYIINPTIVEMEDTELDLVVA
GTGDAVMMVESEAKELTEEVMLGAVMAGHEAFQPVIDMIIRLAEKAAKEPWDFVPEDHSE
LEAKVQKLVGKDIAKAYTIKDKTERYAALGAAKEKAIAELALSEANPDGVDPAVLKGVLK
DVEASVVRGGIIKTGKRIDGRKLDDVRAIVSEAGILPRTHGSALFTRGETQALCVATLGT
GEDEQMIDDLTGMYKERFMLHYNFPPYSVGETSFRLAPGRREIGHGKLAWRAMRAVLPSA
EDFPYTIRLVSEITESNGSSSMATVCGSSLALMDAGVPIKRPVSGIAMGLIKDPDGIAVL
SDILGDEDHLGDMDFKVAGTEVGITSLQMDIKIAGITKEIMETALSQAHAGRAHILAEMN
KALTGARGELADTAPRIEQMKIPVDKIRDVIGTGGKVIREIVEKTGAKVNVEDDGTIKIA
SSDAGSIKAARDWIHSLTAEPEQGAIYQGKVVKVMDFGAFVNFFGARDGLVHVSQLKAER
VNHPNDVVKEGDSVWVKLMGFDDRGKVKLSMKVVNQETGEEITAEGDAA
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgttcaatattcaaaaagagacgatcgactgggctggacgccagctcaccattgaaacc
ggccgtatggcccgccaggcgaccggatcggttctggtcacttacggcgagacaagtgtg
ctcgcgaccgccgtggcgatgaaacaggtcaaggaaggaatggatttcttcccgctgacc
gtgaactaccaggaaaaatacttcgcagccggcaagatccccggtggctttttcaagcgc
gaaggccgtccgaccgataaggagacgctgacctcgcgcctcatcgaccggccgatccgc
ccgctcttccccaaaggcttcaagaacgacacccaggtcatgctgaccgtcctgtcgcac
gacatggaaaacgatcctgatatcgtggccatggtcggcgcgtcggcggcgctggttctg
tccggcctgcccttccttggccccatcggcgctgcgcgcgtgggttacaaggatggtggc
tacatcatcaatccgaccatcgtggagatggaggacaccgagcttgatctggttgtcgcc
ggtacgggcgatgccgtgatgatggtggaatccgaagcgaaagaactgaccgaagaggtt
atgctcggcgcggtgatggccggccacgaggctttccagcccgtgatcgacatgatcatc
cgcctggcggaaaaagccgcgaaagagccgtgggacttcgtgccggaagaccattccgag
ctggaagccaaggtccagaagctcgtcggcaaggatatcgccaaagcctacaccatcaag
gacaagaccgagcgctatgcggcgcttggtgccgcgaaggaaaaggccatcgcggagctc
gccctgtcggaagccaatcccgacggtgttgatccggcggtgctcaaaggcgtgctcaaa
gacgtggaagcgtctgtcgtgcgcggcggcatcatcaagaccggcaagcgcattgacggg
cgcaagctggacgatgtgcgcgctatcgtgtcggaagcgggcattctgccgcgcacgcac
ggttcggccctgttcacgcgcggtgaaacccaagcgctgtgtgttgccacgctcggcacc
ggcgaagacgagcagatgatcgacgatctgacggggatgtataaggagcgcttcatgctc
cactacaatttcccgccctattcggtcggtgaaacctccttccgcctggctccgggccgc
cgcgagattggccatggcaagctggcctggcgggccatgcgcgcggttctgccgagcgcg
gaagacttcccctacacgatccgtctggtctccgagatcaccgagtccaacggctcgtcc
tcgatggcgacggtgtgtggttcatccctcgcgctgatggatgccggtgtgccgatcaag
cgtccggtttcgggcatcgccatgggccttatcaaggacccggacggcattgccgtgctg
tcggacattctcggtgacgaagatcatctgggcgacatggacttcaaggtggccggtacc
gaagttggcatcacctcgctgcagatggacatcaagatcgccggcatcacgaaggagatc
atggaaaccgcgctgagccaggctcatgccgggcgcgcccatatcctcgccgagatgaac
aaggcgcttaccggcgcccgcggcgagctggccgataccgcgccgcgcatcgagcagatg
aaaatcccggtcgacaagatccgcgatgtcatcggcacgggcggcaaggtgatccgcgag
attgtggagaagaccggtgccaaggtgaatgtcgaagacgatggcacgatcaagatcgcc
tcgtcggacgcaggctccatcaaggcggcccgcgactggatccactcgctgacggctgag
ccggagcagggcgcgatctatcagggcaaggtggtcaaggtcatggactttggtgccttc
gtgaacttcttcggcgcgcgtgacggcctcgttcacgtctcccagctgaaggccgagcgc
gtcaatcaccccaacgatgtcgtcaaggaaggcgattctgtatgggtgaagctgatgggc
tttgacgaccggggtaaggtgaaactttccatgaaggtcgtgaaccaggaaaccggtgag
gaaatcaccgctgagggcgacgccgcgtaa
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