Geoglobus acetivorans: GACE_1392
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Entry
GACE_1392 CDS
T03507
Name
(GenBank) RNA-binding protein, containing S1 domain
KO
K07573
exosome complex component CSL4
Organism
gac
Geoglobus acetivorans
Pathway
gac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GACE_1392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gac03019
]
GACE_1392
Messenger RNA biogenesis [BR:
gac03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
GACE_1392
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
GACE_1392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
HypA
EXOSC1
Zn_ribbon_3
DUF7129
A2L_zn_ribbon
Zn_ribbon_NUD
Cas12f1-like_TNB
Prok-RING_1
DZR
Zn_ribbon_RPB9
Zn_ribbon_8
Zn_Tnp_IS91
Zn_ribbon_LysW
HVO_2753_ZBP
C1_1
Zn_ribbon_RPAB4
Zn_ribbon_DUF2089
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AIY90433
UniProt:
A0A0A7GF25
LinkDB
All DBs
Position
complement(1153648..1154139)
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AA seq
163 aa
AA seq
DB search
MPGKGVYEEDGKLFAATAGKVRIEEKTISVETVKEIPELGKDDVVIGRVVDTRNSFAMVE
IARKRGSERALRHYDRALLHISNMSKDYMKNVDDAVKYWDIVVARVIDNSLRLSIKEKDL
GVVRAICSKCGSRLEVEKDKLKCPECGNVEKRKVSANYGKGEW
NT seq
492 nt
NT seq
+upstream
nt +downstream
nt
atgcctgggaaaggtgtttatgaagaggatggaaagcttttcgcggcaacagccggaaaa
gtcagaatagaagagaagaccataagcgtggaaactgtgaaggagatacctgagctggga
aaggatgatgttgtcataggcagggttgtggatacgaggaacagctttgcaatggtggaa
attgcgaggaaaagagggagtgagagggctttgaggcattatgacagggcgttgcttcac
atctccaacatgagcaaggattacatgaaaaacgtggatgatgccgttaaatactgggat
attgtggttgcaagggtgatagacaacagcctgaggctttccataaaggaaaaagacctt
ggagtggtgagggcaatctgcagtaaatgtggttcaagacttgaggttgagaaggataaa
cttaaatgtccggaatgtggtaatgtcgaaaaaagaaaagtttctgcaaactatggcaaa
ggagagtggtga
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