Gymnodraco acuticeps: 117533300
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Entry
117533300 CDS
T09661
Symbol
dhx38
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
gacu
Gymnodraco acuticeps
Pathway
gacu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gacu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117533300 (dhx38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gacu03041
]
117533300 (dhx38)
Enzymes [BR:
gacu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117533300 (dhx38)
Spliceosome [BR:
gacu03041
]
Complex C
Other components
Step II factors
117533300 (dhx38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
T2SSE
nSTAND3
AAA_16
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
117533300
NCBI-ProteinID:
XP_034052862
UniProt:
A0A6P8SZS1
LinkDB
All DBs
Position
Unknown
AA seq
1257 aa
AA seq
DB search
MDDDVSMHRLEGSDPDDQVGGLIVKKKSAAEEAHVFRAPTPRTSLLGLDLLAAQKRKERE
SKEQADAIADERNSKKSKVTSYKDWEEGKSDSGSDEEEEEEDDKDSGVKNKESRKYRVTG
SETPSNPGGVSEEFKRRHQQREKDRREHGVYTTSNEDKNREREKERSRDKGRDRRSERGE
REGSRGSSSGRSERGDRSERSQREGWSDRISRGSKREEPSSPQNRPRDSFTPSRSNWEED
DSGYSSSRHSQWESPSPAPSNREMERSERSHRSVRESERRDRSVRGRYPDDTPLPTPSYK
YNEWANDRKHLGSTPRLSQGKGRKEDGQGGIMFDNEDEKDQWVEDQKQADRDWYMMDEGY
DEFHNPFTTTSEEYVKKREQILQKQTQKRISAHRRQINEDNERWETNRMLTSGVVQRLEV
DDDFEEDNAAKVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDPTSDMAIIARKGSQLVRK
HREQKERKKAQHKHWELAGTKLGDIMGVKKTEEADRSGGKAVGEDGKVDYRAEQKFADHM
KDKSEASSDFAKKKTLLQQRQYLPIFAVRQQLLNIIRDNSIVIVVGETGSGKTTQLTQYL
HEDGYTSYGMVGCTQPRRVAAMSVAKRVSEEIGTNLGEEVGYAIRFEDCTSEKTLIKYMT
DGILLRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLRDVVSRRTDLKLIVTSATMDS
DKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQGLQIHLSGLIGDILIFMPG
QEDIEVTSDQIVERLEDLENAPALTVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAE
TSLTVDGIMFVVDAGYCKLKVFNPRIGMDALQVYPISQANANQRSGRAGRTGPGQCYRLY
TQSAYKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQLWI
LGALDNTGSLTPTGRLMVEFPLDPALSKMLIVSCDMACSADILIIVSMLSVPAIFYRPKG
REEESDQVREKFSVPESDHLTYLNVYMQWKNNNYSSNWCNDHFIHTKAMRKVREVRSQLK
DIMVQQRMNLISCGSDWDIIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSSLFG
MGYTPDYIIYHELVMTTKEYMQCVTSVDGEWLAELGPMFYSVKQAGKSRTENRRRAKEDI
INMEEEMSMAEEQLQARREEQDKKTNTGTVKVVKICTPGRKDEAPMTPRRTPARFGL
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgatgtgtccatgcacaggctggaagggtctgatcccgatgatcaagttgga
ggactgatcgtaaagaagaagagtgctgctgaagaggcccatgtttttcgggctcccact
ccacgcacgtccctgctgggcttggatctgctagcagctcagaaaaggaaggagcgagag
agtaaagaacaagcagacgctattgcagatgaacgaaatagcaagaagtcaaaggttacc
tcctataaggactgggaggaaggtaaaagtgactctgggtctgatgaagaagaagaagaa
gaagatgataaggacagtggtgttaaaaacaaagagagcaggaagtatcgtgttactggc
tcggagaccccctcaaatcccggaggggtcagcgaggagttcaaacgcagacaccagcag
cgagagaaagacagacgtgagcacggggtctacaccacctccaacgaggacaagaacaga
gaaagggaaaaagaaaggagccgagataaggggagagaccgaaggagtgaaagaggggag
cgagagggcagccgcggcagcagcagcggccggtcggagcgcggtgatcggagcgagcgc
tcacagagggagggctggtctgatcgcatcagccgggggagtaagagagaagagccgtca
tcgccacagaatcgccccagagattccttcacaccctcacgatcgaactgggaggaggat
gatagcggttattccagttcacggcattcccagtgggagtctccgtcccccgccccgtct
aacagagagatggagcgctcagagagaagccatcgctccgtccgagagagtgagaggaga
gacaggtcagtcagaggccggtaccctgacgacacacccctgcctaccccatcatacaag
tataacgagtgggcgaatgacaggaaacatttgggatctacacctcgtttatcacaagga
aaaggcaggaaagaagatgggcagggaggaattatgtttgataatgaagatgagaaagac
cagtgggtggaggaccagaagcaagctgacagagattggtacatgatggatgaaggatat
gatgagttccacaaccctttcactaccacctctgaagaatatgtaaagaagagagagcag
attcttcagaagcagactcaaaaaaggatatctgcccatagacggcagatcaacgaggat
aatgagcggtgggagactaaccgtatgctgaccagtggtgtggtgcagaggttggaggtg
gatgacgacttcgaggaggacaatgctgccaaggttcatctgctggtccacaacctggtt
cctccttttctggatggaagaatagtattcactaagcagccagagcctgtcatccctgtg
aaagatccaacatctgacatggccatcatcgctcgtaaaggcagccagctcgttcggaaa
catcgtgagcagaaagaacgcaaaaaggcacagcacaaacattgggaattggcaggcacc
aagttgggggacatcatgggagtcaagaagacagaggaagcagaccgctccgggggcaaa
gcggtgggcgaggacggcaaagtagactacagagcagagcagaaatttgcagaccacatg
aaagacaagagcgaggccagcagtgactttgctaagaagaagacccttctgcaacagaga
cagtatcttcccatcttcgcggtcagacagcagcttcttaacatcataagggacaacagc
attgtgattgttgttggggagacgggcagcgggaagaccacccagctgacccagtacctg
catgaggacgggtacaccagctacggcatggtgggttgtactcagcccagaagagtggcg
gccatgagtgtggccaagagagtcagcgaggagataggaaccaacctgggagaggaggtg
ggctacgcaatccgttttgaggactgcacatcggagaaaacattaataaagtacatgacg
gacggtatcctgctcagggagtcactgagggagtcggacctggaccactacagtgccgtg
atcatggacgaggctcacgagcgctccctgaatactgacgtgctgttcggcctgctgcgt
gatgttgtatctcggcggactgatttgaaactcatagtcacctctgctaccatggactca
gacaagttcgctgcattttttggcaacgtacccattttccatattcctggaagaacattt
cccgtagacatcttatttagcaagactcctcaggaggactacgtggaggcagcagtgaag
caggggctgcagatccacctcagcgggctgataggagacatcctcatcttcatgcccggg
caggaggatatcgaggtgacctcggatcagatcgtggagcggttggaggacttggagaac
gctccggctctgaccgtgctgcccatctactcccagctgccctccgacctccaggccaag
atcttccagaaggctccagatggtgtgaggaaatgcatcgtcgctacaaacatcgctgag
acctctctcaccgtggacggaatcatgtttgtcgtggatgcaggatactgcaaacttaag
gttttcaaccctcgcattggaatggatgctctacaggtctatcccatcagccaggctaat
gctaaccagcgctcaggcagagcaggacgtacaggaccagggcagtgttacaggctctac
actcagagcgcctacaagaacgagatgctgaccaccaccataccagagatccagaggacc
aacctggccaacgtggttctgctgttaaagtctctgggtgttcaggatctgctgctcttc
cacttcatggacccccccccagaggacaacatgctcaactccatgtaccagctctggatc
ttgggagctctggacaacacaggctctttgacaccgacggggcgtctgatggtggagttt
cccctcgaccccgccctgtccaagatgctgatcgtgtcctgcgacatggcctgcagtgcg
gacatcctcatcatcgtctccatgctgtctgtgcccgccatcttctacagacctaagggt
cgtgaggaggagagtgaccaggtaagggagaagttctctgtcccagagagcgaccacctc
acatacctcaacgtctacatgcagtggaagaacaacaattactccagcaactggtgcaac
gaccacttcatccacaccaaggccatgcgcaaggtacgagaggtgcgctcccagttaaag
gacatcatggtgcagcagaggatgaacttaatttcctgcgggtcagactgggacatcatc
agaaagtgcatctgtgcagcgtacttccaccaggctgccaaactcaagggcattggggaa
tatgtgaacgtgaggacaggcatgccatgtcacctccatcccaccagctccctctttggt
atggggtacacccccgactacatcatctaccacgagctcgtcatgaccaccaaggagtac
atgcagtgtgtgacttcagtggatggagagtggctggcagaacttgggcccatgttttac
agcgtcaaacaggcgggaaaaagcagaacggagaaccgtcggcgggccaaggaggacatc
atcaacatggaagaggagatgtccatggctgaggagcagctgcaggcgcggagagaggag
caggacaagaagaccaacactggcactgttaaggttgtaaagatttgcacaccaggaaga
aaagacgaggcccccatgacgcccagacgcacccctgcccgatttggactgtag
DBGET
integrated database retrieval system
