Gymnodraco acuticeps: 117534393
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Entry
117534393 CDS
T09661
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
gacu
Gymnodraco acuticeps
Brite
KEGG Orthology (KO) [BR:
gacu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gacu00536
]
117534393 (col13a1)
Glycosaminoglycan binding proteins [BR:
gacu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117534393 (col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117534393
NCBI-ProteinID:
XP_034054473
UniProt:
A0A6P8SU94
LinkDB
All DBs
Position
Unknown
AA seq
719 aa
AA seq
DB search
MCEDQKWGVAGKQGEERTRSAQSKQPRWRNWKDLSGVSICIAVSLLCLGVCIVVFVRSSE
LQSRILSLEQRDAQLSAWVGSLEQVEPVIMGRLDRILEEKLAAQLPKTREVREAPYSCLC
PPGPPGPPGRAGFPGDKGIMGIPGRMGLMPRAGEQGAPGEPGLSIIGPRGPPGQPGTRGF
PGFPGPIGLDGKPGQNGPKGDMGQRGVKGLQGEPGLKGQKGVCGDYTHRGLFVQELPLKT
LAALRSTQALMLKQGGPGAQGPPGPPGPPGTPGTPGLNGASGPAGKPGEPGKPGKDPRVS
FASLLPGLKGEPGVPGQKGDRGGAGPAGSDGSKGTKGDLGTKGGSGLPGAPGFKGQAGVP
GSPGIPGKRGYRGDKGEPRIAATGIKGEPGSPGLPGQLGPKGDTGNKGDKGEAGPEGSVG
PRGLPGPTGEPGKAEIHNNENDIRNIPLMGPPGLPGPSGPPGNKGEVGLPGAPGVDGDKG
PRGKPGDTGPAGPAGHEGPRGESGVMGFPGPKADKGDMGLSGSPGLDGPTGEKGSRGALG
PIGLPGSMGPKGEPGEGARSEMMYCPPGPAGPPGPVGPAGTQGFSGPKGELGIGIRGEKG
ATGLKGDKGDRGHLGLPGAHGLDGRPGPVGLIGPAGVSGPAGPKGERAEKGDAGLPGPIG
PQGIPGLVGPQGLKGNRGERGKKGNRGAKGEKGDQGAPGLDAPCPLGDDGLPVPGCWNK
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgaggatcagaagtggggggtcgcgggtaaacagggtgaggagaggacccgcagc
gcgcagtccaagcagccccgctggaggaactggaaggatttgtcaggcgtttcaatttgc
attgcagtgtctctgctgtgccttggagtttgcattgtggtttttgtgcggagctcggag
ctgcagtccaggatattaagtctggagcagcgggacgcgcagctctccgcctgggttggg
tctctggagcaggtggagcccgttatcatgggccggctggaccgcatcctggaggagaag
cttgcagcgcaactaccgaagacccgggaggtgagagaggccccctacagctgcctgtgc
cccccaggacctccaggtccccctggacgggcaggctttccgggggacaaaggcatcatg
gggattcctgggagaatgggtctaatgccacgagcaggggaacagggagcaccgggggag
ccaggtctttccatcattggaccgagaggacctcctggacaacctggaacaagaggattt
ccaggatttccaggtccaattgggttggatggcaagcctggacagaacggaccgaaggga
gacatgggtcagcgtggcgttaaaggactccaaggggagccaggactcaaggggcaaaag
ggtgtatgtggagactacacacaccggggcctgtttgtgcaggagctgcctctgaaaacc
ctggctgccttgcgctccactcaggctctgatgttgaagcagggcgggcctggagcgcag
ggacccccaggacctccaggaccccccggaactccagggacaccgggccttaatggagcc
tctggcccagcaggtaagcctggtgagccaggcaaacctggaaaagacccgagggtcagc
ttcgcttcacttttaccaggactgaagggtgaaccgggagtgccaggacaaaagggggat
cgagggggcgctggcccagcgggttctgacggctcaaagggaacaaagggagacctcggg
acaaagggaggatcaggactcccgggcgctcctgggttcaagggccaggctggcgtccct
gggtcccctggaatccccgggaagaggggctacaggggggacaagggagagccacgcatt
gctgccacgggaattaaaggagaaccgggttccccaggactaccaggccagctgggaccc
aagggtgacacaggcaacaagggagacaagggggaagcaggacctgaaggctcagttgga
ccaagaggtcttccaggcccaactggggagccaggaaaggctgaaatccacaacaatgaa
aatgatattcgcaacatacccctgatgggcccccctggattacctggaccttcaggcccc
cctggaaacaagggtgaagttggtctgccgggtgctccaggtgtggacggagataaggga
cccagagggaagcctggagatactggtcctgcaggcccagccggtcatgaagggcccaga
ggggagagcggtgtcatgggcttcccgggacccaaagcagacaagggagacatgggtcta
tctggatcacctggtttagatggccctacgggtgaaaaggggtcaagaggggcccttggc
cccattggattacctggctcaatgggtcctaaaggagagcctggagaaggagccaggtca
gagatgatgtattgtcctccagggcccgccggacccccaggaccagtggggccagccgga
actcaaggattttcagggcctaagggggagctaggcataggcatcagaggagaaaaggga
gcgacgggtctcaagggcgacaagggggacagaggccatctcggacttcctggggctcat
gggttagacggcagacctggtccagtgggtctaataggaccagcaggtgtttcaggaccc
gcaggaccaaagggagagagagctgaaaagggagatgcaggattaccaggaccaatcggg
cctcaaggcatccctggtttagtaggaccacaaggactcaaagggaaccggggagagagg
ggcaagaaaggcaacaggggggccaaaggggaaaagggagaccaaggagcacctggatta
gatgccccctgtccgttgggagacgatggcttacctgtaccaggatgttggaataaatga
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