KEGG   Gymnodraco acuticeps: 117534845
Entry
117534845         CDS       T09661                                 
Symbol
cop1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
gacu  Gymnodraco acuticeps
Pathway
gacu04115  p53 signaling pathway
gacu04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:gacu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    117534845 (cop1)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    117534845 (cop1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:gacu04121]
    117534845 (cop1)
Enzymes [BR:gacu01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     117534845 (cop1)
Ubiquitin system [BR:gacu04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    117534845 (cop1)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     117534845 (cop1)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_EML_2 WDR55 Beta-prop_EIPR1 Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd zf-C3HC4_2 EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR19_1st Beta-prop_TEP1_C zf-C3HC4 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd zf-RING_2 Beta-prop_EML Beta-prop_DCAF4 zf-RING_UBOX Beta-prop_Aladin Beta-prop_WDR90_POC16_2nd zf-C3HC4_4 zf-C3HC4_3 zf-RING_5 RING_XB3-XBAT31 WD40_like WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_IFT122_1st Beta-prop_WDR41 zf-rbx1 zf-RING_10 WDR90_beta-prop_4th RING_ZNF598 UvrD-helicase RING-HC_RBR_RNF216 Sina_RING zf_C2H2_10 zf-C2H2_AcuF
Other DBs
NCBI-GeneID: 117534845
NCBI-ProteinID: XP_034054980
UniProt: A0A6P8TC87
LinkDB
Position
Unknown
AA seq 710 aa
MMSGNRPQQSPGGASSVPSTSSSSSTGNSNSSGGSNAVTSNGNNSANVVPSRTLPAATEG
GLAVPTLAAVPSSRGGFASLSRPSASSGSRKKSHHQAPLYNGLLNSYEDKSNDFVCPICF
EMIEEAHMTKCGHSFCFKCIRQSLEDSNRCPKCNYIVDNVDQLYPNFLVNELILKQKQRS
EEKRLKLDHPNGSRWQVFQDVLSPDQENLDLANVNLMLELLVQKKKQLEAESQAAQRQIL
MEFLKEARRNKREQLEQLQKELNFLEEDIKRVEEMSGLYCPMMEAECTVPNVEAPSPAPS
CSSIIEAPDYSQPPGFGGTTQGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSNKMSRITD
EGRNLNQLDDFMECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGV
TKKIKVFEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGF
TGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCCV
KFSPTSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTDSQ
LKLWNVNKPHCLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFKFD
TVKSVLDKDKKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV
NT seq 2133 nt   +upstreamnt  +downstreamnt
atgatgtcaggcaaccggccacagcagagccccggtggagcgagctcagtgcccagcacg
agcagcagcagtagcacgggtaactcaaacagtagcggtgggagcaacgccgtcacaagt
aatgggaacaattctgcaaatgttgtgccctcccggaccctaccagcagccaccgagggc
ggcttggcggtgccaactttggccgccgtaccctcgtctcggggcggctttgcttccctg
agcagaccctctgcgtcttcaggcagccgaaagaaatcccaccaccaagcacccctctac
aacggcctcttgaattcatacgaagataaaagcaacgattttgtctgcccaatttgcttc
gagatgatagaagaggcacacatgacaaaatgtgggcacagtttttgtttcaagtgtatc
cgccagagtctggaggacagcaatagatgtcccaagtgtaattatattgtcgataacgtt
gatcagctttacccaaactttcttgtaaatgaactgattcttaaacagaaacagaggtcg
gaagagaagagactaaaactagatcatcctaatgggtctcggtggcaggtgttccaggat
gttttgagtcctgaccaggagaacttggacctggcaaacgtcaacctgatgctggagctc
ctagtccagaaaaagaagcagctggaggcggaatcccaagccgctcagagacagatcctt
atggagttcctcaaagaagccaggagaaacaagagagaacaacttgagcaactgcagaaa
gagctcaactttctcgaggaggacattaaacgtgttgaggaaatgagcggcctgtactgt
ccaatgatggaggcggagtgtacggtgcctaatgtggaggctccatcaccagcacccagc
tgcagcagtattattgaggcaccagactacagccagcctccaggatttggtggaacaacc
cagggcaagagacagacctggtacaacagcaccctggcgtcacggaggaagaggctgact
gctcattttgaggatctggaacagtgctacttctccaacaagatgtcacgcatcaccgat
gaaggcaggaacctgaaccagctggatgacttcatggagtgcctgtcaaagttcacccgc
tacaactctgtgcggccgctcgccaccctctcgtacgccagcgacctgtacaacggctcc
agtattgtctccagtattgagtttgaccgtgactgtgactactttgccatcgccggtgtg
accaagaagatcaaggtgtttgagtacggcacagtgatccaggacgccgtggacatccat
taccctgttaatgaaatgacctgcaattccaaaatcagctgtatcagctggagcagctat
cacaagaaccttctggccagcagtgactatgaggggactgtgatcctgtgggacgggttc
acaggccagaggtccaaagtctaccaggaacatgaaaaaaggtgttggagtgtcgacttt
aatctgatggacccaaagctgttagcctccggttcagatgatgctaaagtgaagttatgg
tcgaccaatcttgacaactctgtggccagcatcgaggccaaggccaacgtctgctgtgtg
aagttcagtccgacctccaggtatcatctggccttcggctgcgcagaccactgtgtccac
tactacgatctacgcaacactaagcagccaatcatggtgttcaaaggccacaggaaggcg
gtgtcttacgctaagttcgtcaacggagaggaaattgtttctgcttcaacagacagtcag
ctgaagctgtggaacgtcaacaaacctcactgcctgcgctccttcaagggtcacatcaac
gagaagaacttcgtaggcctggcctccaacggagactatgttgcctgtggcagtgaaaac
aactccctgtacctgtactacaaaggcctttccaagacactgttaacgttcaagtttgac
acggtgaagagcgttctggacaaagacaagaaggaagacgacaccaatgagtttgtcagt
gctgtctgctggagagctctgcccgacggagagtcaaatgtactgattgctgcaaacagt
caaggaaccatcaaggtgctggagctcgtctga

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