Gymnodraco acuticeps: 117536049
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Entry
117536049 CDS
T09661
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
gacu
Gymnodraco acuticeps
Pathway
gacu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gacu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117536049 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gacu03041
]
117536049 (sf3b1)
03036 Chromosome and associated proteins [BR:
gacu03036
]
117536049 (sf3b1)
Spliceosome [BR:
gacu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
117536049 (sf3b1)
Complex B
117536049 (sf3b1)
Complex C
U2 SnRNP specific factors
117536049 (sf3b1)
Chromosome and associated proteins [BR:
gacu03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
117536049 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
GST_N_4
DUF2298
Menin
Motif
Other DBs
NCBI-GeneID:
117536049
NCBI-ProteinID:
XP_034056665
UniProt:
A0A6P8TG97
LinkDB
All DBs
Position
Unknown
AA seq
1321 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKANLLEEGDQGVGLDSTGFFDQEIYGGSDSRFAGYVTSI
AANEQEDDDEEDSSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPAKIADREDEY
KGRRRMMIISPERLDPFADGGKTPDPKLQVRSYVDVMLEQNLSKEEREIRQQMVEKAKAG
ELKVVNGSAASQAAAAAKRKRRWDQTADQTPTNTTPKKVSSWDQADNSAETPGHTPGHTP
AHTPSNSRWDETPGRPKGSETPGATPSNRMWDPTPSHTPAGAATPGRGDTPGHATPGHGG
ATGSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVEETPTPGASKRKSRWDETPA
SQMGSSTPTFTPGKTPIGTPAMNMATPSPGHLMSMTPEQLQAWRWEREIDERNRPLTDDE
LDAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPMGGMTGFHMQVEDRTTKQMNDQPSGN
LPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKA
REFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLI
DEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPS
LLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRT
ISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYAN
YYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRM
ALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAAD
IDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNK
SAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNV
IGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELL
ELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETC
SPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLV
HRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGP
CRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDEKNAYVRYELDYA
L
NT seq
3966 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacccacgaagacatcgaggcccagatcctcgagatccagggg
atgaaggccaatctcctggaggaaggcgaccaaggagtgggcctcgactccactggcttt
tttgaccaggagatttatggaggcagtgacagtcgctttgctggatatgtcacttccatt
gctgccaatgaacaggaggatgacgatgaagaggattcatcaacaagcttgttgggacaa
aagaagccagggtaccacgcgccggtggcgatactcaatgccattcctcagtcagacgag
caatatgacccatttgcagagcatcgtccggcgaagatcgcagaccgggaagatgaatac
aaaggccggcgcagaatgatgatcatctcccccgagcgtctcgatccttttgcagatggg
ggcaaaacgccggaccccaagctgcaagtcaggtcgtatgtggacgtcatgttggagcag
aacctctccaaagaagagagagagattcgtcagcagatggtagagaaggccaaagctggg
gagctgaaagttgtcaacgggtccgctgcctcacaagctgccgccgccgctaaacgtaaa
cgtcgttgggaccagacagctgaccaaacccccacaaatactacacccaaaaaagtgtcc
agctgggaccaggcagacaactctgctgagactccaggacacacaccaggacacacccct
gcacacacaccttcaaacagccgatgggatgaaacccccggccgccccaaaggcagcgag
acccccggagcgactcccagtaaccgcatgtgggaccccactcccagccacacccccgca
ggtgctgccaccccaggcaggggcgacacaccgggccacgccacacccggacatggagga
gccacgggaagcgtacgaaagaaccgctgggacgaaaccccaaagacagagagggagacc
ccgggacacgggagcggctgggctgagaccccgcgcacagacagaggagacgagtcggtg
gaagagactcccacaccaggggccagtaagaggaagtctcgctgggacgaaacccccgcc
agtcagatgggatcctcaacaccaacattcaccccgggaaaaacccccatcggaacgcca
gctatgaacatggctaccccgtcaccaggtcacctgatgagcatgactccagagcagctg
caggcgtggaggtgggagcgtgagatcgacgagaggaaccgtcctctcacagacgatgag
ctcgatgccatgttcccagagggatacaaggtcttgcctccaccagctggctacgtgccg
atccgtactccagctcgtaaactatccgccacaccgacccccatgggaggcatgacaggc
ttccacatgcaggtggaggaccgaaccaccaaacagatgaacgaccagccctcaggaaac
ctgcccttcctcaaacctgacgacatccagtactttgacaaactgctggtggaagtcgat
gagtccactctgagccccgaggagcagaaagagaggaagatcatgaagctgctgctgaag
attaaaaatggaacaccgcccatgagaaaggccgctctgcgtcagatcacagataaagct
cgtgagttcggagcgggtcctctgttcaatcagatcctgccgctcctcatgtctcccacc
ctggaggaccaggagcgccatctgctggtcaaagtcatcgaccgcatcctctacaaactg
gacgacctggttcgaccatatgtacacaagatcctggtggtgattgagccgctgctgatt
gatgaggactactatgccagagtagaaggcagagaaatcatctccaacttggcaaaggct
gccggtttggctacgatgatttccacgatgagacccgatatcgacaacatggacgagtac
gtgagaaacacgacagcccgagccttcgccgtggtggcctctgctctcggtatcccctcc
ctcctgcctttcctcaaagctgtgtgtaagagcaagaagtcgtggcaggccagacacacg
ggcatcaagatcgtgcagcagatcgccatcctcatgggctgcgccatcttgccccacctc
cgcagtttggtggagattatcgaacacggtcttgtggacgagcagcagaaggtcaggacc
atcagcgctctggctatcgctgccctcgctgaagccgccacaccgtacggtatcgagtcc
tttgactctgtcctcaagcccctctggaagggtatcagacagcacagaggaaagggtctg
gctgcgttcctcaaagctatcggttacctgatcccactgatggacgccgagtacgccaac
tactacaccagagaggtgatgctgatcctcatcagagagttccagtcccctgacgaggag
atgaagaagattgtactcaaggtggtgaagcagtgttgtggcactgatggtgtggaagca
aactacattaagactgagatcctgccgcccttcttcaaacacttctggcagcacaggatg
gctctggacagacgcaactacagacagttggtggacaccacagtggagctggccaacaaa
gtgggagcagcggagataatttctcgcatcgttgatgacctgaaagacgaggcggagcag
tacaggaagatggtgatggagaccatcgagaagatcatgggcaacctgggcgccgccgac
atcgaccacaagctggaggagcagctgatcgacggcatcctgtacgccttccaggaacag
accaccgaggactctgtgatgctgaacggtttcggcacggtggtgaacgccctcgggaag
cgagtgaagccgtacctgcctcagatctgcggtacggtgctgtggcgtctcaacaacaag
tcggctaaagtccgtcagcaggctgcagatctgatctcacgcacagctgtcgtcatgaag
acctgccaagaggagaagctgatgggtcatttgggagttgtgctgtacgagtatctggga
gaagaataccccgaagtgctgggtagcatcctgggagctctgaaggccatcgttaacgtt
atcggaatgcacaagatgactccaccaatcaaagacctgcttcctcgtctgactcccatc
ctgaagaacagacacgagaaggtgcaggagaactgcatcgacctggtgggcagaatcgct
gacaggggtgctgagtacgtgtcggccagagagtggatgaggatttgcttcgagctgctg
gagctgctgaaggctcacaagaaagcgatccgcagagcgactgtgaacacgttcggttac
atcgccaaagctatcggccctcacgatgtgttggccactctgctgaacaacctgaaggtg
caggagcgtcagaacagagtttgtacgacggtagccatcgccatcgtggctgagacctgc
tctccgttcactgtgctgccggcgctcatgaacgagtaccgcgtgccggagctgaacgtg
cagaacggcgtcctgaagtccctctccttcctgttcgagtacatcggagagatgggcaaa
gattacatctacgccgtcaccccgctgctggaagacgctctcatggacagagatctggtc
caccgacagacggccagtgcagtggtgcagcacatgtctctgggggtctatgggttcggg
tgtgaggattctctgaaccacctcctgaactacgtgtggcccaacgtgttcgagacgtct
cctcacgtcatccaggcggtgatgggggccctcgagggtctccgggtcgccatcgggccc
tgccgcatgctgcagtactgcttacagggtttgttccacccggccaggaaggtgcgagac
gtctactggaagatctacaactccatttacatcggctcgcaggacgccctgatcgctcac
tacccccaggtctacaacgacgagaagaacgcgtacgtccgctacgagctggactacgcc
ttgtaa
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