Gymnodraco acuticeps: 117537815
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Entry
117537815 CDS
T09661
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
gacu
Gymnodraco acuticeps
Pathway
gacu03008
Ribosome biogenesis in eukaryotes
gacu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gacu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
117537815 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
117537815 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gacu03021
]
117537815 (xrn2)
03019 Messenger RNA biogenesis [BR:
gacu03019
]
117537815 (xrn2)
03009 Ribosome biogenesis [BR:
gacu03009
]
117537815 (xrn2)
03016 Transfer RNA biogenesis [BR:
gacu03016
]
117537815 (xrn2)
Transcription machinery [BR:
gacu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117537815 (xrn2)
Messenger RNA biogenesis [BR:
gacu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
117537815 (xrn2)
Ribosome biogenesis [BR:
gacu03009
]
Eukaryotic type
Pre-60S particles
RNases
117537815 (xrn2)
Transfer RNA biogenesis [BR:
gacu03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
117537815 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
117537815
NCBI-ProteinID:
XP_034059078
UniProt:
A0A6P8T5X8
LinkDB
All DBs
Position
Unknown
AA seq
987 aa
AA seq
DB search
MGVPAFFRWLSRKYASIVVHCVEEKGKECNGVCIPVDTTKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKAAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGAELVEEKTRIREEVIGKGGYLPPDEIKERFDSNCITPGTEFMDNLAQCLRYYVAE
RISNDPGWKNVTVILSDASVPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCNQVGHELKECQGVAREKQGEHDEFAGSMPGSEQE
FIFIRLCVLREYLARELTMASLPFPFDFERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVTIYKDVVHKTGGYVTHNGYVDLERVELIMQAVGVAEDNIFKKRKEDDEGFKRRMKE
KKKRMKNERGPAHMTSGQFAPQALGRRDKPDAVNNARHQAFDMRMQSNKDAAQSLKASMK
NGGNSAGPSGSTDGRGVKRKSNDSDSEPEPEDDVRLWEDGWRQRYYKTKFDVEATDDDFR
QKVVRSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKGMFDDFEKDTKPFKPL
EQLMGVFPAASGNFLPPTWRSLMSSPDSSIIDFYPDDFAIDLNGKKYAWQGVALLPFVDE
RRLWAALADVYPDLTTEEQRRNSLGSDLMFVGKAHPLFDFIHELYRTESNEDTEIPAELC
HGIQGLLNLDGKPILPDQPVTSPIPTLRDIAHNSAIGVKFRDPAFEKDFVFKAVLLSGAK
MPNAVLKPGDWEKGNRQPWRPQTGFNQHRQPAHLDQSGFRALGHSMNRNQHGGRGGGGGG
GGEEEEEEEVVSIATLLHQTPTKETTEVNKVADTSLSNIPGRTAYWERLRPTSSPSTLGS
SSSSSRMVAAAGVTAGIEPRRLRARRTSRTSRTSRTRAAGGRLLLSSREDTSRGSMTGER
TGDNTIRATAPEGSRPPPPSRRYDWNN
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgtttttccgttggcttagccgaaaatatgcttcaatcgttgtgcat
tgtgttgaggagaaggggaaagaatgtaacggcgtctgcattcctgttgatacgacaaag
cctaaccccaacgaggtggaatttgacaatttgtacttggacatgaacgggatcattcac
ccctgcacacatccagaggacaaagctgccccaaaaaatgaagacgagatgatggtcgcc
atttttgagtacatcgaccgcctgttcaatatcgtgcggcccaggagagttctctacatg
gccatcgatggagtggctccacgcgccaagatgaaccagcagcgctctcgccgtttccga
gcctccaaagaaggagcagagctggtggaggagaagactcgcatccgagaggaggtcatc
gggaaaggaggttatcttccacctgacgagattaaagagagatttgacagcaactgcatc
actccaggaacagagttcatggataacttggctcagtgtctcagatattacgtcgcagag
agaatcagcaatgatccgggctggaagaacgtcacggtgattctgtctgatgccagtgtt
cccggtgaaggtgaacacaagatcatggactacatccggagacagagagctcaacccaac
cacgacccgaacacacaccactgcctgtgtggagctgacgctgatctgatcatgctgggc
ctggctacccacgagcccaacttcaccatcatcagagaggagttcaaacccaacaaaccg
agaccctgcgccctctgcaaccaggtcggacacgaactcaaagagtgccagggcgtggct
cgagagaagcagggagagcacgatgaatttgccggctcgatgccgggttctgagcaggag
ttcatattcatcagactctgtgtgctgcgagagtatttggctcgagagctgacgatggcc
agtctgccgtttcccttcgacttcgagaggagcatagacgactgggtcttcatgtgcttc
ttcgtgggaaacgacttcctgcctcacctgccgtccttagagatcagagagggagcgatc
gatcgactcgtcaccatctacaaagacgttgtgcacaaaactggaggatacgttacacac
aacggctatgtggatctggagcgagtggagttgatcatgcaggcggtcggcgtcgcagag
gacaatatcttcaagaaacgcaaagaggacgacgaaggcttcaagagaagaatgaaagag
aagaagaagaggatgaagaatgagcggggtccggcccacatgacctcgggtcagtttgct
cctcaggctctggggaggagagacaaacccgacgccgtgaacaacgcccggcaccaggcc
ttcgacatgaggatgcaatccaacaaggatgccgctcagtcccttaaggcctcgatgaag
aacggtggcaattctgcagggccgagcggcagcacagacggccgcggggtcaagaggaaa
tctaacgacagcgacagcgagccggagcctgaagacgacgtcaggttgtgggaggacggc
tggaggcagagatactacaagaccaagtttgacgtggaggcgacggacgacgacttcagg
cagaaggtggtgcggtcgtacgtggagggactctgctgggtgctgagatactactaccag
ggctgcgcctcctggaagtggtacttcccgttccactacgctcccttcgcctccgacttc
aaagacatcaaagggatgttcgacgacttcgagaaggacactaaaccgttcaagcccctg
gagcagctgatgggagtcttccctgcagccagcgggaacttcctgcccccgacgtggagg
agcttgatgagcagcccggattcttccatcatcgacttctaccccgacgactttgccatc
gatctcaacggcaagaaatacgcctggcagggagtggccttgttgccgtttgtcgatgaa
cgcagactgtgggcggctctggcggacgtttaccccgacctcactactgaggaacagagg
aggaacagtcttggcagcgacctgatgtttgtggggaaagctcacccgctgttcgacttc
attcacgaactctaccgcacagaatctaacgaggacactgagatccctgcagagctgtgc
catgggatccagggtttattaaaccttgacggcaaacctattctaccagatcagccagtg
acgtcccccatcccaacgctgcgagacatcgcacacaacagcgccatcggagtgaagttc
agggatcctgccttcgagaaagacttcgtgttcaaggcggtcctcctctccggagcaaag
atgcccaatgcggtgctgaagcccggggactgggagaaagggaacagacaaccatggaga
ccccaaacgggcttcaaccagcaccgacagccggcccacctggaccagtccggcttcaga
gctctgggtcacagtatgaacagaaaccaacatggaggaagaggaggaggagggggagga
ggaggagaggaggaggaggaggaggaggtggtcagtatagcaacactgctccaccaaact
cctaccaaggaaactacagaggtcaacaaagtggcggacaccagcctttccaacatcccc
ggcagaacagcttactgggaacgcctccgtcctaccagcagccccagtaccctcggcagc
agcagcagcagcagccgtatggtagcggcagcgggggtcacggctggaatcgagccacgc
aggctcagggctcggcgtaccagcagaaccagcagaaccagcagaaccagagccgcgggg
gggcggctcctcctcagcagccgggaggataccagcaggggttcgatgaccggagagaga
accggggacaacaccatcagggctacggctccagagggttcccggcccccccctccctcc
aggagatacgactggaacaactga
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integrated database retrieval system
