Gymnodraco acuticeps: 117539332
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Entry
117539332 CDS
T09661
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
gacu
Gymnodraco acuticeps
Brite
KEGG Orthology (KO) [BR:
gacu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gacu04147
]
117539332
00535 Proteoglycans [BR:
gacu00535
]
117539332
00536 Glycosaminoglycan binding proteins [BR:
gacu00536
]
117539332
Exosome [BR:
gacu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117539332
Proteoglycans [BR:
gacu00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
117539332
Glycosaminoglycan binding proteins [BR:
gacu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117539332
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF959
Ribosomal_60s
DUF1554
Motif
Other DBs
NCBI-GeneID:
117539332
NCBI-ProteinID:
XP_034061368
UniProt:
A0A6P8TC13
LinkDB
All DBs
Position
Unknown
AA seq
1630 aa
AA seq
DB search
MLRMKTLLLLLAFFAWSSDAWFWSKDPEPTTSTSIESTPSGTTGAANATQKNLEEEEEEE
EEEEEEDDNLSGVGDEILNVTTGIRKFVAAWDVTPTPGTTNGGPTQKVESANPNTTEESG
VSLLQLIGDPPPDEIPRVTGPRGEPGFIFNRASVSGQLALAHIPNPFHRHFSLVFHIKPT
SPDASVLFSITDGPQKIMYVGVKLSAVQNSRQRVQFFYTEPGSEASYEAASFEVPSMVET
WSRFSLSVFDEQVTFYQGCDSEPQVVKFERSPDPMELDAGAGIFVGQAGGADADKFKGVI
LDLKVVGDHRAAERLCDDEDDSDAASGDFGSGDGERRQTGHTVKTTPRPLRPVPAPPLIP
SQGNILRESGTAVSKGEKGDRGNQGLKGDLGPAGPKGESSSSGSSSGSSSQGGGQKGEKG
VKGSSGFGYSGNKGERGAQGSSGPPGPPGPAAEVVRLGNGDVVQQVSGPSGPPGFPGING
AQGPAGTDGEPGDPGEDGKAGATGPQGSPGNPGTAGFKGEKGDVGEGQPGPRGAPGPPGL
PGTGTGDHPTFFDMEGSGFPDSDKIRGGRGLPGLPGPPGPPGTSVALGPNGPVAFGPPGP
PGQDGVPGIPGPPGQPGRPGLPGPGGERGEGGDLGLPGVAGEKKNSEDSGFFTGLYSYFA
PSSTGSQGDLGLPGTSGQSGLAGLPGPMGPVGPVGPPGPPGPGYRGSHSNQDQDDVNNGY
AGLPGPPGPQGPYGIAGLPGKSGLPGNHGDKGTEGSRGPPGMPGMDGFPGQSGDKGDRGQ
RGEQGLPGRDGGGAGPPGPPGPPGEITYQRSDSNEVIWNGGSQGGSGLPGQAGFPGPSGP
KGDKGDTGLPGYAAKGAKGEPGIVLGPDGRPQYLGGLAGRPGDAGPPGPEGPSGPYGASG
HKGEIGIPGRPGRPGLNGVGGEKGDSGSGSGSGVGYPGVPGAPGPPGPPGSYPTDRQGGY
DDYSRYNPAAKGDKGDPGPPGRVEITGGGSTFDIYSLRNEMKGESGTPGYKGDKGEPAGG
YYDPRYEVSGAGAPGPPGPRGDSIVGPAGPQGPPGEPGRGYDGQQGPPGPPGPAGGSTPE
VYRGTQTINIPGPPGPPGTPGLPGYSSGVTVLRTYDTMTATARRQPEGSLVYIIDQTDLY
LRVRGGIRQVQLGDYIALPVVDGNEVAAVEPPPVVPYSPHHTENTDPSVHDSQRQPESPV
YPDPHHPTHQDPHHPTRQDPHHPTHQDPHHPTHQDPHHPTHQDPRHPHEPTHQDPHEPTH
QDPHHPTHQDPHHPTHQDPRHPHEPTHQDPHHPTHQDPHHPTHQDPHQPTHQDPHQPTHQ
DPHHPHQPTHQDPHHPHQPTHQDPHHPTHQDPHHQEPQYPSNPDPRYPSHPDPRYPSNPD
PRYQPDPRFPPPTDPRFPSYTDRLNQPDGRVSVNTAQERPAYPDSRYADPRFAVTPQRRP
PPRVPHTPVHHHTSGAGLHLIALNSPHSGSMRGIRGADYQCFTQAQAIGMKGTFRAFLSA
KLQDLHSIVRRSDRDHLPIVNLKDEVLYDSWDAMFNEGRMKDNVPMYSFDGKDVLNDSTW
PEKMLWHGSNAAGRGQVDSICEGWRVGEQALTGTAAELRSGNLLQQTPSSCSGSYVVLCI
ENSYIGQAKR
NT seq
4893 nt
NT seq
+upstream
nt +downstream
nt
atgttgaggatgaagacgttgctccttctcctggctttttttgcctggagctcggacgcc
tggttctggtccaaagacccagaacccacaacatcaacctccattgagtcaacaccatcg
ggaacgacaggtgccgccaacgcaactcagaagaacctggaggaggaggaggaggaggag
gaggaggaggaggaggaggacgacaacttgtctggggttggggatgaaatcctcaacgta
accacgggaatccgtaagtttgtggcggcgtgggacgtgaccccgacccccgggactact
aacggaggccccacacagaaggtggagagcgctaaccctaacaccaccgaggagagcggc
gtctctttgctgcagctgatcggagacccccctccggatgagatccccagggtgactgga
cccaggggggagccgggcttcatcttcaaccgggcgtcggtgtcgggccagctggctcta
gcccacatcccgaaccccttccaccgccacttctccctcgtcttccacatcaagcccacc
tcccccgacgcctcggtgctgttctccatcaccgacgggcctcagaagatcatgtacgtg
ggcgtgaagctgagcgcggtgcagaatagccgccagagggtgcagttcttctacaccgag
cccggctcggaggcttcgtacgaggccgccagcttcgaggtgcccagcatggtggagacc
tggagccgcttctcgctgtccgtcttcgacgagcaggtcactttctaccagggctgcgac
tcggagccccaggtggtcaagttcgagcgctcccccgaccccatggagctggacgcgggg
gctgggatctttgtggggcaggcggggggggccgacgctgacaagttcaagggtgtgatt
ctagatctgaaagtggtgggggaccatcgtgcagcggagcgtttgtgtgacgacgaggac
gactctgacgctgcgtctggtgacttcggcagcggtgacggcgagcggagacagacagga
cacactgtgaagaccactcctcgtcccttgcggccagtacctgccccccctctgattccc
tcacaggggaacatactcagagaatcaggtaccgccgtttctaaaggggagaaaggagac
agagggaaccagggcttaaagggggaccttggccccgcagggccgaagggggagtcctcc
tcctccgggtcgtcctccgggtcctcctctcagggtggaggacagaagggagaaaaagga
gtaaagggcagttccgggttcggttactccggtaataaaggagagcgcggggctcagggg
tcctctgggccccctggcccccccggccctgcagctgaggtggtgcgacttggtaatgga
gacgtggtgcagcaggtgtccggaccctccggacccccagggttcccggggatcaatggg
gcccaaggacctgcagggacggacggagagccaggtgatccaggagaggatggaaaagct
ggtgccacggggccacaaggttctccaggaaatccaggaacggctggctttaaaggcgaa
aagggtgatgttggagagggtcagccagggcccagaggtgccccgggaccaccaggactt
cctggaaccggcactggggaccacccaaccttttttgacatggagggctcaggattccca
gactcggacaaaatcaggggtggacgtggccttccaggtctgccagggccccccggcccc
cctgggacttcagtggcactgggacccaacggcccggtagctttcggacccccaggaccg
ccgggacaggacggagtccccggaataccgggaccgcctggccagccaggaagaccgggt
ctaccgggtcccggaggagagaggggtgaaggtggggatcttggtcttccaggagtagct
ggagaaaagaaaaactcagaagactcaggctttttcacgggcctgtattcttactttgct
ccatcctctacggggtctcagggtgacctgggtctgccgggtacttctgggcaatcgggg
ctggcggggcttccaggtcccatggggcccgtcggacccgtcggacctccagggccaccg
gggcctgggtaccgaggaagtcatagtaaccaggatcaggacgatgtgaacaacggctat
gctggtctccccggcccacctggacctcagggtccatatggtattgcaggacttcctggt
aaatccggtttgcccggtaaccatggagacaaaggaaccgaggggtcacgaggacctcca
gggatgccaggaatggacgggttccctggacagtcgggcgataagggagaccgaggacag
agaggagagcagggtctgccagggcgtgacggggggggagcggggcctccagggcccccc
ggaccaccaggagaaatcacctaccagagaagtgattctaatgaagtgatttggaatgga
gggtcacagggaggatctggtcttccaggtcaagcaggatttccaggaccctcggggcct
aaaggagacaagggagacacagggcttccaggatatgcagctaagggggcgaaaggagag
cctggtatcgtcctggggccggacgggagacctcagtacctcgggggtcttgcaggacgt
ccgggtgacgctggacccccgggccctgagggaccttcaggtccttatggtgcttcagga
cataaaggagagattgggattccaggcagacctggtcgcccggggctgaacggcgtcgga
ggagagaagggagactcaggatcaggatctgggtctggagttggttaccctggtgttcca
ggtgcccccggcccccccggacctcctggatcttatcccacagacagacagggaggatat
gacgattattccagatataaccccgctgctaaaggagataaaggtgaccccggaccccca
ggcagagttgagattacaggaggcgggtcgacctttgacatctactccctgaggaatgag
atgaaaggggaaagtggcaccccgggctacaaaggggataaaggagaaccggccggggga
tattatgacccccgatatgaagtgagcggggccggagcacctggacccccgggtccaaga
ggagactccatcgttgggccagcaggccctcaggggccccccggtgagccagggagaggc
tatgatggtcagcaaggacccccagggccccctggacctgcaggaggatccacacctgaa
gtttacagaggcacacagactatcaatattcctggacccccgggaccacctggaacacct
ggactacctggatactcctcaggggtgacggtgttgaggacgtatgacaccatgacagcc
accgccagaagacagcctgagggctctctggtctacatcatagatcaaactgatctctac
ctgagggtccgggggggcattcgtcaagtccagcttggggattacattgctttgcccgtt
gtagatggtaacgaggttgcagctgtggagcccccacctgttgttccctactccccccac
cacaccgaaaacaccgacccctccgtacacgactcccaaaggcaacctgagagccccgtc
tacccggaccctcaccaccctacacatcaggaccctcaccaccctacacgtcaggatcct
caccaccctacacaccaggaccctcaccaccctacacaccaggaccctcaccaccctaca
caccaggaccctcgccaccctcacgagcctacacaccaggaccctcacgagcctacacac
caggaccctcaccaccctacacaccaggaccctcaccaccctacacaccaggaccctcgc
caccctcacgagcctacacaccaggaccctcaccaccctacacaccaggaccctcaccac
cctacacaccaggaccctcaccaacctacacaccaggaccctcaccaacctacacaccag
gaccctcaccaccctcaccaacctacacaccaggaccctcaccaccctcaccaacctaca
caccaggaccctcaccaccctacacaccaggaccctcaccatcaggaaccacagtacccg
tccaaccctgatcccagatacccctcccaccctgaccccagatatccctccaaccctgac
ccccggtatcagccggaccctcggttcccaccacccacagatccacgtttcccgagttac
acagaccgcctgaaccaaccggacgggagggtttctgtcaacacggctcaggagcgccct
gcgtacccggactcccgctacgcggaccctcgcttcgccgtcactcctcagcgaagaccc
cctcctcgggtgccccacactccagtgcaccatcatacctcaggagcagggctccacctc
atcgccctgaacagcccccactccggctccatgcgggggatccgcggagcagactaccag
tgcttcacccaggctcaggccatcgggatgaagggaactttccgggccttcctctccgcc
aaactgcaggacctgcacagcatcgtgcgccggagcgacagggaccacctgcccatagtc
aacctgaaggacgaggttctgtatgacagctgggacgccatgtttaatgagggcaggatg
aaggacaacgtgccgatgtactccttcgatggcaaagacgtcctcaacgacagcacatgg
ccggagaagatgctgtggcacgggtcgaacgccgcggggaggggtcaggtggacagcatc
tgtgagggctggcgggtgggcgagcaggcgctgaccggcacggcggcggagctgcggagc
ggcaacctgctgcagcagacccccagcagctgctccggctcctacgtggtgctgtgcatc
gagaacagctacatcggccaggccaagagataa
DBGET
integrated database retrieval system
