Gymnodraco acuticeps: 117539654
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Entry
117539654 CDS
T09661
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
gacu
Gymnodraco acuticeps
Pathway
gacu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gacu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117539654 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gacu03019
]
117539654 (edc4)
Messenger RNA biogenesis [BR:
gacu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117539654 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
117539654 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_EDC4L
WDR55
Motif
Other DBs
NCBI-GeneID:
117539654
NCBI-ProteinID:
XP_034061795
UniProt:
A0A6P8TTU3
LinkDB
All DBs
Position
Unknown
AA seq
1392 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNSTDAPSSDGPRMPSFNGELNGLLGAAGLLGNTD
RSTMSDSTRPISTDLCSTQECQIICLSGDNGSTSLPITSNNVEIVASQDSSINSKARGSN
KVKIQPVAKYDWEHKYYYGRLIAVSNSFVAYAIRGANNHAMIRVLSVGSAERSLLKGFTG
AVTDLAFAHLDSSLLGCVDEAGNLMVWQLTCTASKILDQVVVHIRRPEDSPLNSHRRLIW
CPFIQEDNEENQDDPSQTLALLHEDLAEVWDLEVLRATYSSWPVDAADVKDGLITVKGHT
QRVSEGALSPDGTVLATASHDGYIKFWQIYIEGGQDQPRFVSRCLHELRPHGGRPLSCLL
FCDNHKRQDPEVPFWRFLITGADQNQELKLWCTVSWTCLQTIRFSPDMFNSSVLPSLKAS
LDLSSEFLILTDVQRKVLYVMELRQDLDKGMATFTAVSEFLLTHPVLSFGVRDVAHSRLR
HTEVLPAEEESESLTTEGIQGPTESKSGIQIKLYCVHTKSLQDVQIWFQPNLSSNFPCFL
PHSDSQDGFAGFSDHLTDQSSDKESGSGSQTDLRKIPSLPAPTDFLSNSGANSITKLMTP
DAFMTPSASVPASPGSSASSLTIVTAISSNSDSTNRAMDDVSQTPNRAENTSSSSLALST
SSPRPASAVLLPGLESLQALASPSGPLALDGPQVLDAPLLPPLASPTRARSPDVISSAST
AMSQDMPEIASQTLQLQRVLGSSLESSPLSALQTDSMASAASALHLLTSPRTANSNSLLS
LELGGADISVGGSVESEPRLSNTPSLLENALSQENPGAGGGSEGSISHTPWPAAPDITRE
TRNSLRDNGLGDCSREEAKDRHLNSPYHRRSYHLTQNDSQDAGAEQSDPDDEVPTMAASS
GNCGRSSHRLPVKEWKTSPRGSPKVKRKTKKDDSESSLSRQMESSQMNAEVQDELLMLLR
SQQRELTELRGQITAMQSTIMVQVEHVLSNHQEQEQRRLERVLAESQNHQQQLQDQLSQQ
LSHTLSSVLTNRMDKVLREEMKKTVPQTISKCLEPVTGQLNNTIAAKLTAVEITLKDNVS
KVVKSKNMTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSMFQQINDSFKQGTQ
EYIQQLESHMKNRQQRELEAREPVVGQLQQMIESFQSSTDQLANNITANVRAEVQHQIQM
MVGNLQETILSHVQRIVKGEVTMAMKEQQAVVTSSIMQAMRSAAGTPVPTAHHDYQTQQA
NILQLLQQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQHPCTLSQPVLLSLIQQLS
SNLTTRSELKISYLEDAVMNLDHGDPLTRDHMSSVLAQVRPKLFTFLQQDPHSPLSKRAR
RLMMMLQGLVSH
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaattctaatatagatattgagggtgcaacccagcatctccgggacattcta
aagctcgaccgtcccgggaacagcaccgatgcaccatcgagtgatggtccaagaatgccg
tcttttaatggagagctgaacggtttattgggagcagcaggccttttgggaaacactgat
cggtccaccatgtcagattctaccagaccaatctccacagacctctgcagcactcaggag
tgtcagataatctgcctttctggggataatggctccacttctctccctatcacctccaat
aacgtggagattgtggcgagtcaagattccagcatcaacagcaaggctcggggcagcaac
aaggtgaagattcaacccgttgccaagtacgactgggaacacaagtattattacggcaga
ctgatcgcggtgtccaactccttcgtggcctacgccatcagaggagccaacaaccacgct
atgatccgtgtcctgagtgttggctctgcggagcgctccctcctgaagggcttcaccgga
gccgtcacagatctggctttcgctcacctcgactcgtccctgttgggctgtgtggacgag
gcgggcaacctgatggtctggcagctcacctgcacagcaagcaagatacttgatcaggtg
gtggttcatatccgacggccagaagactccccgctgaactcccaccgccgcctcatatgg
tgcccgttcatccaggaagacaacgaggagaaccaggacgaccccagccagactttagct
cttttgcacgaagacttggctgaggtgtgggacctggaggtcttgagggccacctacagc
agttggcccgtcgatgctgccgacgtgaaagatggcctcatcacagtcaagggacacaca
cagcgggtcagtgaaggggccctgtctccagatggaaccgtgttagccacagccagccat
gatgggtacatcaagttctggcagatttacatagagggggggcaggaccagcccagattt
gtatccagatgtcttcatgaattgcggcctcacggaggacgccccctttcctgccttctt
ttctgcgacaaccacaaaagacaggaccccgaggttcctttctggcggttccttataact
ggagcggatcagaaccaggagttgaagctgtggtgcactgtgtcctggacctgtttacag
accatcaggttttctccagatatgtttaactcatcagttctgcctagtctgaaggcgagc
ctggacctctcctcagagtttctcatccttactgacgtccagaggaaggttctgtatgtg
atggagctgcggcaggatctggacaaaggcatggccaccttcacagctgtgtcagagttc
ctcctgacccaccctgtgctcagcttcggggtccgggacgtcgcacacagccgactgcga
cacactgaggtcctccctgctgaggaggagagcgagagtctcacaacagagggaattcaa
ggaccaacagagtccaagtctgggatccaaattaaactttactgtgttcacaccaagagt
ctacaggatgtccagatctggtttcagcccaacttgagttccaacttcccatgcttcctg
ccccattctgattcccaggatggttttgcagggttttcagaccatctcactgaccagagc
tcagacaaggaatcaggaagtggctcccagaccgaccttcggaagatcccatcacttcct
gctccaactgacttcctgtcgaactcgggggctaacagcattaccaagctgatgaccccc
gatgccttcatgacacccagcgcttcggttccggcttctcctggcagcagcgccagcagt
ctgaccattgtgaccgctatcagcagcaactctgactctactaacagagctatggacgat
gtgagtcagactcctaacagagcagagaacaccagcagcagcagtctggctctctccacc
agcagcccccgacctgcttctgctgtgctgctgcccgggctggagagcctgcaggcttta
gcgtctcccagcgggcccctggcactggacggccctcaggttctggatgcccccctcctt
ccccctctggcctctccgaccagggcccgctcccctgacgtcatctcctcagcctccaca
gccatgtcccaggacatgccggagatcgcctcccagaccctgcagcttcagcgggttctg
gggtccagtcttgagtcttcccctctctccgctctgcagacggacagcatggcctcggct
gcgtccgccctgcacctgctcacctccccgcgcacagccaacagcaacagccttttgtcc
ctggaactcggaggggctgatatctcagtgggtggatcagtggagtcagagcccagacta
agcaacaccccgtctctgctggagaacgccctatcacaggagaacccgggggcgggggga
gggtcagaggggagcatcagccacacaccctggccggctgcgcctgacatcaccagagaa
accaggaacagtctcagggacaatggtcttggagactgttcaagggaggaggcgaaggac
agacacttgaactcaccttaccaccggcgctcctaccacctcacacagaacgacagtcag
gacgccggcgctgagcagagtgaccctgatgatgaggtgcccaccatggcagcatcctca
ggaaactgtggtcgttcttcccacagactaccagtgaaggagtggaagacctcaccacga
ggctcaccaaaagtaaagaggaagaccaagaaagatgacagtgaatcgtctctgtccagg
caaatggaatctagtcagatgaatgcagaagtgcaggacgagctgctgatgctcctgcgc
agccagcagagggagttaactgagctgcgtggacagattacagccatgcagagcaccatc
atggtccaggtggagcacgtcctctccaaccaccaggaacaagaacagcgcagactagag
cgagtgctggcagagagtcagaatcatcagcagcagctccaggatcagctgagccagcag
ctcagccacaccctcagctcagtgctcaccaacaggatggacaaggtgctgcgggaggag
atgaagaagacagtcccacaaacaatttctaagtgtctggagccagtgaccggtcagctg
aacaacacaattgctgctaagctgactgctgtggagatcaccctgaaggacaatgtcagc
aaggtggtcaaatctaagaacatgacggatgcaattggacgagcagcagccgaggcgatg
caggggcccatccaggcggcctataaagacgccttccagagcatcgtgctgcctgttttc
gaaagaggatgccagtccatgtttcaacaaatcaacgacagctttaaacaaggcacacaa
gaatacatccagcagctcgagagccatatgaagaacaggcagcagagagagctggaggca
cgtgagcctgtggtaggccagctccagcagatgatcgaaagcttccaaagctccaccgat
cagctggccaataacatcacagcaaacgtccgggcagaggtccagcaccagatccagatg
atggtgggaaatttgcaggagactattcttagccatgtgcagcgaatcgtcaagggcgag
gtgaccatggcgatgaaggagcagcaggcggtggtcacctccagcatcatgcaggcgatg
aggtcagcagccggcactcccgtccccacagcgcaccacgactaccagacgcagcaggcc
aacatcctgcagctgctccagcagggccagctcaaccaggcctttcagcaggctctgtca
gccactgatctgaacctggtcctgtacgtgtgtgagaccatcgactcccagcaggtgttc
gggcagcacccctgcactctgagccagcccgtgctgctgtcgctcatccagcagctctcc
tccaacctcaccacccgctctgagctcaaaatcagctacctggaggacgccgtgatgaac
ctggaccacggcgaccccctgaccagagaccacatgtcttccgtgttggcccaggtcaga
ccaaagctcttcaccttcctgcagcaggacccccacagcccgctcagcaagagggcgcgg
cgcctcatgatgatgctgcagggcctcgtcagccactag
DBGET
integrated database retrieval system
