Gymnodraco acuticeps: 117542170
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Entry
117542170 CDS
T09661
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
gacu
Gymnodraco acuticeps
Pathway
gacu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gacu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117542170 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gacu03400
]
117542170 (msh6)
DNA repair and recombination proteins [BR:
gacu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117542170 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_II
MutS_IV
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
117542170
NCBI-ProteinID:
XP_034065545
UniProt:
A0A6P8U3F6
LinkDB
All DBs
Position
Unknown
AA seq
1387 aa
AA seq
DB search
MAKQSSLFNFFAKSPPPVSKSKPSPSPTEADLPSSVLKSSSSPKEQAKQTPQQPAKTNKV
KVKSKDKSTKGGFSKLFGDKAATAKQSDNTCTFSAGALVWAKLEGHPWWPCMVVPQPLSG
QQMRGKGRDQRIHVHFFDEPATRGWVSTKYVRDYQGSDSRDAKIGGVFFSGKPVLRRAME
LADQGLFDSPDKRLKIPLCMDPSDDDEEEEEDDEEEEMELDKSMLTDEELTDEDEPNNEK
GKSAKVSLRSSRASTGSGNKAKRRRIVVASDSGGSDEEFKPELAASSSEDEGEEATVASE
DDGGGKITNDSEAESPIKPAKRKRPEEKSASTKSKIPTTPSNAPKRFPASVADDTKSRLS
AFSAPDNIDSQANGSGTGVSATIWDHEKLEWLQDGKRKDSRRRRQSEDDYDSSSLYVPED
FLNRTTPGMRRWWQLKSEMFDTVLFFKVGKFYELYHMDAVIGVNEMALTFMKGTWAHSGF
PEIGFARFSDVLVQKGYKVARVEQTETPDMMEARCKKMARPTKFDRVVNREVCRIITRGT
QTYSVLDGAPSESQSKFLLSLKEKAEEESSGRCRTYGVCFVDTSVGYFHVGQFPDDRHCS
RLRTLIAHFAPAEVLFEKGNPSAETRKIFKASLSSALQEGLNAGTQFWDAQKTLKNLSEE
DYFREAAGKDQGKGKNALPSLLKKMTSKTDSLGLTPKEGHELGLSALGGCIFYLKKCLVD
HELLSLANFEEYVPVDVELEKAAGRDNFFSRTRQRMVLDGVTLANLEIFQNGLGGTEGTL
LERLDTCSTPFGKRLLKQWLCAPLCNPSSIKDRLDAVEELMAAQAQATEVSDLLKKLPDL
ERLLSKIHSIGTPLKGQDHPDSRAVLYEEVTYSKRKITDFLSALEGFKTMQEIITVLTPV
AGNSQSKLLHQVVSLKGDKDGLFPDLSAELKRWDKAFDHNKARTTGVITPKAGFDPEFDE
ALSSIKDCERELQDYLDQQKKRVGCKNMSYWGTGRNRFQMEVPDSISERNIPEEYDAKST
KKGWKRYVTRESERLFSELQGYEEKRDAALKDCMRRLFYNFDKNYRDWKTGVECMAVLDV
LLAFSRYSQGGDGSMTRPQVVLPEGDDQVAPFLDLTGSRHPCVTKTFFGDDFIPNDVFIG
CPGSSEAGEENGQASCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLRYTPVDRV
FTRLGASDRIMAGESTFFVELSETASILHHATKHSLVLLDELGRGTATYDGTAIASAVVK
ELAEKICCRTLFSTHYHSLVEDYANNPAVRLGHMACMVENECEDPSQETITFLYKFITGA
CPKSYGFNAARLASLPEEVIQSGHRKAQEFEKSTISLRLFKKLCQFAEDVSVGNTHFTSL
VQMLNNL
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctcccttttcaatttttttgccaagtctccgccgccagtctccaag
tcgaagccgagtccctctcccaccgaggcggacctgccttcctccgttttgaagtccagc
tcctctccaaaggagcaagctaaacaaacaccacaacaacctgccaagaccaacaaagta
aaagtgaagagtaaggacaagtccactaaaggagggttcagcaaactgtttggcgacaag
gccgcaacagccaaacagagcgacaacacatgcacattcagtgctggcgcccttgtgtgg
gcaaaactggagggacacccctggtggccatgcatggtggtaccccaaccactgtcagga
cagcagatgaggggcaagggtcgggaccaacgcatacatgtccatttctttgatgaacca
gctactagaggatgggtcagcaccaaatatgtccgagattaccaaggctcggacagcagg
gatgctaaaataggcggggtgttcttcagcggcaaacctgtgttacgccgtgcaatggag
ctcgctgatcaaggtttgttcgacagtccagataaaagactaaagatccctctctgtatg
gatccctctgatgatgatgaagaggaggaggaggatgatgaagaggaagaaatggagcta
gacaagtctatgctgactgatgaagagctcactgatgaggacgaaccgaacaatgagaaa
gggaagtcagccaaagtcagtctacggtcatcccgggcttcaacaggaagtggaaataaa
gccaagcgccgccgcatagttgtagcttcagatagtggtggatcagacgaggaattcaaa
ccagaactggctgcgtccagcagcgaggacgagggggaagaagcaacggtggccagtgaa
gacgacggaggcggcaagatcacaaatgattccgaagcagaaagccccatcaagcctgca
aagcgcaaacgtcctgaagaaaagtctgcttcaacaaaatctaagataccaactactccg
tctaacgcaccaaaacgctttccagcatctgtcgcagacgacacaaagtctcgtctgtca
gccttctctgcccccgacaacattgatagccaagcaaacggatcaggcaccggtgttagc
gccaccatttgggaccacgagaagctggagtggttgcaggatggcaagaggaaagacagc
cgaaggcggcgacagtcggaggacgactatgattcctcctccttgtatgtgccagaagac
tttctcaacagaaccactcctggtatgcgtcggtggtggcagctcaaatctgaaatgttt
gatacagtccttttctttaaggtggggaagttttatgagctctaccacatggatgctgtg
atcggagtcaacgagatggcgctaacgttcatgaaggggacctgggcacactcaggcttc
ccagagatcggctttgcacgtttctcagatgtgctggttcagaaaggctacaaggtggct
cgtgtggagcagacggagaccccagacatgatggaagcgcgctgtaagaaaatggctaga
cccaccaagttcgaccgtgtggtgaatagagaagtgtgccgcattatcacacgtggcacc
caaacctacagcgtgttggacggggctccgtccgagagtcagagcaagttcctgctgagt
ttaaaggaaaaggctgaagaggaaagctcggggcgctgccgtacttacggagtctgcttt
gtagatacctctgtgggttatttccatgtcggtcagttcccagacgaccgacactgttca
cgtctgcgcaccctgatagcacattttgcccctgctgaagtgctctttgaaaaggggaac
ccatctgctgaaacacgcaaaatatttaaagcctctctgtcctctgctctgcaggaaggg
cttaatgctggcacacagttctgggatgctcaaaagactctgaaaaacctctctgaagaa
gattactttagagaggccgctggcaaggatcaggggaaagggaaaaacgctcttccttct
cttctaaaaaagatgacctccaagacggattcactgggccttactcctaaagagggccat
gagctgggactgtccgcactgggaggatgtattttctatctgaagaaatgcctggttgac
cacgaactgctctctttggccaactttgaagaatatgtccctgttgacgttgagctggag
aaagctgcaggacgtgacaatttcttttcccggactcgtcagcggatggtccttgacgga
gttactctagcaaacttggaaatctttcagaacggcttaggaggaactgaagggacgctg
ctggagcgcttggacacctgctctaccccatttggcaagaggctgttgaagcagtggctc
tgtgctcctctgtgtaacccgtcatccatcaaggacagactggacgctgtggaggagctg
atggcagctcaggcccaggccactgaggtttcagacctgctgaagaaactcccagatttg
gagcgtcttctgagtaaaatccacagcatcggcactcctctgaagggccaggatcaccct
gacagcagagccgttctctatgaggaggtcacatacagcaagcgcaagatcacagacttc
ctctcagcactggaaggtttcaaaacgatgcaagagatcatcactgtcctcactccagtc
gcaggcaactctcaatccaagttgctccatcaagttgtcagtctgaaaggtgacaaggat
ggcctctttcccgatctctctgctgaactcaaacgctgggacaaagccttcgaccataac
aaagcccgcaccaccggcgtcatcacacccaaagccggctttgacccagagtttgacgag
gctctgtcctccatcaaggactgtgagcgggagctgcaggattacctggaccaacagaag
aagagggttggctgtaaaaacatgtcctactgggggaccgggcgaaaccggttccagatg
gaggtgcccgacagcatctcggagaggaatattcccgaggagtacgacgcaaagtctaca
aagaaaggctggaagcgttatgtgacaagggaatctgaacggcttttctcagagctgcaa
ggatatgaggagaagagagacgctgccctgaaagactgcatgaggaggctcttctacaac
ttcgacaagaactacagagactggaagactggtgtggagtgcatggcagtgctcgatgtg
ctgctggccttctctcgctacagtcagggcggagacggctccatgacccgcccacaggtg
gtgctccccgagggtgatgaccaggtagcacccttcctcgacctcaccggatcccgccac
ccctgtgtcaccaagaccttctttggcgacgacttcatcccgaatgacgtcttcatcggc
tgccctggcagcagtgaggctggtgaggagaacgggcaggcctcctgtgtcctcgtcacc
gggccaaacatgggggggaagtctaccctcatgagacagtgtggacttgtgatcatcctc
gctcagctgggttgctacgtgcccgctgagagcctgcgctacacgcctgtcgacagagtc
ttcactcggctgggagcctcagatcgtatcatggctggagagagtaccttctttgtggag
ctcagtgagacagccagcatcctgcaccatgccaccaaacactctcttgtgctccttgat
gaattaggaaggggcacagccacatacgatggcacagccattgccagtgccgttgtgaag
gagcttgctgagaagatctgctgtcgcacgctcttctccacacattaccactccctggtg
gaggactacgccaacaaccccgcagtgcgcctgggccacatggcgtgcatggtggagaat
gaatgtgaggacccgagtcaagagaccatcacattcctctacaagttcatcaccggtgct
tgtcccaagagttacggcttcaacgcagctcgcctggccagcctgccagaggaggtcatc
caatcaggacacaggaaggcccaggagtttgagaagagcaccatcagcctccgcctcttc
aagaagctttgccagtttgctgaagatgtttctgtgggcaacacacactttacttcactt
gttcagatgctcaacaacctgtag
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