Gymnodraco acuticeps: 117542554
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Entry
117542554 CDS
T09661
Symbol
skiv2l
Name
(RefSeq) LOW QUALITY PROTEIN: helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
gacu
Gymnodraco acuticeps
Pathway
gacu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gacu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117542554 (skiv2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gacu03019
]
117542554 (skiv2l)
Enzymes [BR:
gacu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117542554 (skiv2l)
Messenger RNA biogenesis [BR:
gacu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117542554 (skiv2l)
mRNA degradation factors
3'-5' decay
Ski complex
117542554 (skiv2l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
HTH_23
Motif
Other DBs
NCBI-GeneID:
117542554
NCBI-ProteinID:
XP_034066170
UniProt:
A0A6P8U521
LinkDB
All DBs
Position
Unknown
AA seq
1251 aa
AA seq
DB search
MDRINVPPAGPMDLPLSLLEMGCSGRFELITHPVPDQPLAPQSTLPHGLPPTCLSLETEV
EKQFLRDAAWLPIHDTDFAFQKFLKVTQREVNVNSLIHCSPSALHSGVSVVRDPTTGMLL
DFTEVLLENTSLSAKNSLSFQRQPGPPAESLRGSNTNYPFLPGGMEELTLEQIKKKSELE
EEIDFENDLLRVPPGLKAGMDFTDKEAKIAKAEVNLMSLLSTLDITDLQPEAEEKEESKG
SEEAPKLPRTNSLEDLGVKDVVSSSAPSEKGNNDKSKPKENPEENKKWAIPVNISAPCDD
FYKRIPNPAFKWPFELDVFQKQAVLLLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMTR
TIYTSPIKALSNQKFRDFKQTFGDVGLLTGDVQLSPESSCLIMTTEILRSMLYNGSEVIR
DLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKKHI
YVISTMKRPVPLEHYLYTGNSTKTQKEMFLLVDPTGNFLTKGYYAAIDAKKERTSKHAQS
FGTKGTSHNTSSSQDRSVWLTLLHFLSQRQQTPVVAFTFSRTRCDDNARSLDSMDMTTSI
EKAEIHSFFQKSVSRLRGADRQLPQILLMRDLLKRGVAVHHSGILXILKEVIEMLFSRGL
VKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGTV
IILCKAGVHEMGDLHVMMLGKPTTSSPSSDXPYTMILNLLRVEALRVTDMMRRSFSENHR
DIRXHASESRISQMKKTLSSLPPLDNEGQLSDMLPYYHTVTELRXTTEALQRAILESVNG
MKALSVGRVVVVNKSRNKSYGSYNKGVCVCVSNDSVNRTFTALAICEKGNEEEEGIGNNN
SFPHLYNTALFIPEGPCSHTVQKLKLQDISAITVKTLKVIPDRIIDNYSKRQQPRFRLDP
PGQAISTTTQELLRLAEANPSGMVALEPVNDLKLKSVDVVEDTMRLRVLTRXNQRVKMNK
XKKFEEKFARVQDRMGVQEELDRLLFLVSDQSLSLLPEYHQRIKVLQSLQYVDSSGAVQL
KGRVACQISSHELLLTELLFENVLSPLAPEESAALLSCLVFTQKTQVEPHITNTLQEGID
RVLSVAKRIGELQRECEIPQTAEEFVGQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTV
VRCIQRLDEVLKEVRQAARIVGDSVXGSKMEKKASLAIRRDIVFTASLYTH
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
atggacagaataaatgtgccccccgcgggccccatggacctgccgctgtccctgctggag
atgggatgctccggccggtttgagctcatcacacaccctgtacctgaccagcctttagct
ccacagagcacgctccctcatgggcttcctcccacctgcctgagcctggagacagaagta
gagaaacagtttttacgggacgctgcctggcttcctattcatgacactgactttgccttc
cagaagtttctcaaggtgacccagagagaagtgaatgtcaactctctgatccactgctct
ccgtctgctcttcactcgggtgtctctgtcgtcagagatccaaccacagggatgctgctg
gacttcacagaggtcttactggagaacactagcctgtcagcaaagaactcactttcattc
caacgccaacctggtcctcctgcagagagcctgcgaggaagcaacactaattaccccttc
ctccccggaggaatggaggagcttactctggagcaaatcaagaagaaatctgaactggag
gaggaaatagactttgagaatgatttactcagagttccacctggacttaaagcagggatg
gatttcactgacaaagaagccaagattgcaaaggcagaggtcaacctcatgtccctgctg
tccacattggatataactgacctgcagcctgaggcagaggagaaagaggaaagcaaagga
agtgaggaagctccaaaacttcccagaacaaacagcctggaagacctgggagttaaggat
gttgtgtcatcctcggctccctcagagaaagggaacaatgacaaatcaaagccaaaagag
aacccagaggaaaataagaaatgggccatccctgtcaacataagtgcaccctgcgatgat
ttctataaacgcatccccaacccagctttcaagtggccgtttgagctggacgtcttccag
aaacaagctgttctgctgctggaggctcacgactccgtgtttgtagctgcacacacgtca
gctggcaaaacagtggtggccgagtacgccatcgctctctcacagaaacacatgacaagg
accatctacacctctccaatcaaagccttgtccaatcagaagttcagagactttaagcaa
acgttcggagatgttggactgctgacgggcgacgtccagctcagtcctgaatcttcatgt
ctcatcatgactactgagatcctccggtccatgctttacaacggctcagaggtcatcaga
gacttggagtgggtgatctttgacgaggttcactacatcaacgatgccgagagaggggtt
gtgtgggaggaggttttgattatgcttcctgatcacgtcagcatcatcctcctcagcgcc
acagtgcccaacgctctggagttcagcgagtggatcggacgtatcaaaaagaagcatatt
tatgtgatcagcacaatgaagagacctgtgcctttggagcattatctgtacactggaaac
agcaccaagactcagaaagagatgttcctcctggtggatcctaccggaaacttcctcact
aaagggtattacgcagctatcgatgccaagaaggagcgcaccagcaaacatgcccaatct
tttggtacaaaaggtacttcccacaacacttcatctagtcaggaccgctcggtgtggctc
actctcctgcacttcctgtcccagcggcagcagacgccggtggttgcgttcaccttctct
cgtacaaggtgtgatgacaacgcccgctcgctggactccatggacatgaccacctccata
gagaaggccgagatccactccttcttccagaagagtgtgagtcgcctgcgaggagcagac
cggcagctgcctcagatcttgctcatgagagatctgttgaagaggggggtagcagtccat
cacagcgggatcctgncgatactgaaggaggtcattgagatgctcttctcacgaggtctt
gtaaaggtgctgtttgccaccgagacgtttgccatgggagtgaacatgcctgccaggact
gtggtgttcgacagcatcaggaaacacgatgggaccggcttcagaaatctgctcccaggc
gagtatatccagatggcggggagagcaggacggagaggtctggacgccacgggcaccgtc
atcatcctgtgcaaggctggtgttcatgagatgggagacctgcatgtcatgatgctgggt
aaacccaccacctccagtcccagttcagactgaccctacacgatgattctcaacctgctg
cgagtcgaagccctccgtgtgaccgacatgatgaggaggagcttttctgaaaaccacagg
gacatcaggtaacacgccagtgagagtaggataagccagatgaagaagacgctgtcctct
ctgcctcctctggacaatgaaggccagctgtccgacatgctgccttactaccacaccgtt
acagagctacganacaccactgaggccttgcagcgcgctattctggagtctgtcaacggg
atgaaagctctgtctgtgggtcgagttgtggtggtgaacaaaagcagaaataaaagctat
gggagttataataaaggggtgtgtgtgtgtgtgtcgaatgactctgtgaatcgcaccttc
acagctcttgccatctgtgagaagggcaatgaggaagaggaaggaataggaaacaacaac
tctttccctcacctctacaacacagctctcttcatacctgaaggcccttgcagtcacaca
gtgcagaagttaaagcttcaggacatctcagccatcacagtgaaaaccctcaaggtgatt
cctgaccggattatcgacaactacagcaagaggcaacagccacgattcaggctggatcct
cctggccaagccatttccacgactacccaggagctcctgcgattggccgaggccaaccct
agcggcatggtagccctcgaacccgtgaacgacctcaagttgaagagcgtggatgtggtg
gaggacacaatgaggctccgtgtgctgacgagatagaatcagagagttaaaatgaataaa
tagaaaaagtttgaagagaagtttgctcgggttcaggacaggatgggtgtgcaggaggag
ctggacaggttgctgttcctggtgtcggaccagtctctgtctctgctacctgaataccac
cagaggatcaaggtgctgcagtccctccagtacgtggacagcagcggggcggtgcagctg
aagggccgcgtggcctgtcagatcagcagccacgagctgctgctgaccgagctgctgttc
gagaacgtcctgagcccgctggcccccgaggagagcgccgccctgctgtcctgtttggta
ttcacgcagaaaacacaggtggagccgcacattaccaacacactgcaggagggtatcgat
cgggtgctttcagtggccaagcgtattggagagctgcagagggagtgtgagataccgcag
acagctgaggagtttgttggccagttcaagtttggcctgacagaggtggtgtactgctgg
gccagaggcatgccgttcgcagagatcgcccagctgaccgacgtgcaggagggcacggtg
gtccggtgcatccagcgcctggacgaggtgctgaaggaggtgcgccaggctgcccgcatc
gtgggagactccgtcnctgggagcaagatggagaagaaagcctccctggccatccgcagg
gacatcgtcttcaccgcctccctctacacccactga
DBGET
integrated database retrieval system
